View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12822_high_5 (Length: 431)
Name: NF12822_high_5
Description: NF12822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12822_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Original strand, 55334913 - 55335321
Alignment:
| Q |
17 |
aatgacctcttaatcgagtgggatatgccatcaacaaacattgtattatcatagttaacccctaaagacgagtgaaccaaacttattatttaacccacac |
116 |
Q |
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| T |
55334913 |
aatgacctcttaatcgagtgggatatgccatcaacaaacattgtattatcatagttaacccctaaagacgagtgaaccaaacttattatttaacccacac |
55335012 |
T |
|
| Q |
117 |
aaaatctttaaaaacatgatcaatatcttcttcagctagccgatttctttttacatatataataatattacatactatttaagttattactgtttctcac |
216 |
Q |
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| T |
55335013 |
aaaatctttaaaaacatgatcaatatcttcttcagctagccgatttctttttacatatataataatattacatactatttaagttattactgtttctcac |
55335112 |
T |
|
| Q |
217 |
gtgag----atatatatattttttgaattgaaattattgacattgtatttactat-aacaatatactaccctctcnnnnnnntctat--tatactataag |
309 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| |
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| T |
55335113 |
gtgagatatatatatatatattttgaattgaaattattgacattgtatttactatcaacaatatactaccctctcaaaaaaatctattatatactataag |
55335212 |
T |
|
| Q |
310 |
attgattaagagataagatatttgtataattgttttgagataacttttagtcaactgagctataaatttattgtgttcttaacctctcttacttctcctt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
55335213 |
attgattaagagataagatatttgtataattgttttgagacaacttttaatcaactgagctataaatttattgtgtttttaacctctcttacttctcctt |
55335312 |
T |
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| Q |
410 |
ttcctttct |
418 |
Q |
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| T |
55335313 |
ttcctttct |
55335321 |
T |
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