View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12822_low_1 (Length: 656)
Name: NF12822_low_1
Description: NF12822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12822_low_1 |
 |  |
|
Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-157; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 192 - 481
Target Start/End: Original strand, 4736285 - 4736574
Alignment:
| Q |
192 |
agttatgattttcatcactacatgggaggggtttatgaaggaagttgtggacccaagttgaaccatgcagttactataattggttatggggtaagtgatg |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4736285 |
agttatgattttcatcactacatgggaggggtttatgaaggaagttgtggacccaagttgaaccatgcagttactataattggttatggggtaagtgaag |
4736384 |
T |
 |
| Q |
292 |
aagggaagaagtattggttgattaagaattcttggggtgaaacatggggtgagaaaggctacatgaaggtgctaagggaaagtagtgcaactggaggtca |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4736385 |
cagggaagaagtattggttgattaagaattcttggggtgaaacatggggtgagaaaggctacatgaaggtgctaagggaaagtagtgcaactggaggtca |
4736484 |
T |
 |
| Q |
392 |
atgtagcattgctgtacatgctgcttatcctactatatagtactactttttgatgaattttataatatgatgtaataataagaataagtt |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4736485 |
atgtagcattgctgtacatgctgcttatcctactatatagtactactttttgatgaattttataatatgatgtaataataagaataagtt |
4736574 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 4732939 - 4733115
Alignment:
| Q |
14 |
agatgaaagcaaccgcatatttgtaataacctatgtttgtggatgtagaaaacaaagagaattt-tagtggtttttaacacttttgcacgaagaccttgg |
112 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4732939 |
agatgaaagcaaccacatatttataataacatatgtttgtggatgtagaaaacaaagagaatttatagtggtttttaacacttttgcacgaagaccttgg |
4733038 |
T |
 |
| Q |
113 |
agactaagctcaacatggatgtaacttcattttaaacatgcaaaagataataaataacggtt-aaacacgttctttta |
189 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||| |||||||| |
|
|
| T |
4733039 |
agactaagctcaacatggatgtaacttca-tttaaacatgcaaaagataataaataacagttaaaacacattctttta |
4733115 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 522 - 641
Target Start/End: Original strand, 4736557 - 4736676
Alignment:
| Q |
522 |
taataataagaataagtttcctttattgtccttaatacggagaagatttgaaatgcaatgaaaaaagctcctcaagttgtacagagtacagacccgtgtg |
621 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4736557 |
taataataagaataagtttcctttgttgtccttaatacggagaagatttgaaatgcaatgaaaaaagctcctcaagttgtagagagtacagacccgtgtg |
4736656 |
T |
 |
| Q |
622 |
attcgtcctagctaaattct |
641 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4736657 |
attcgtcctagctaaattct |
4736676 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 250 - 421
Target Start/End: Original strand, 4744854 - 4745025
Alignment:
| Q |
250 |
tgaaccatgcagttactataattggttatggggtaagtgatgaagggaagaagtattggttgattaagaattcttggggtgaaacatggggtgagaaagg |
349 |
Q |
| |
|
||||||||||||||||| | ||||||| || |||||||| || || | |||||||||||||||||||||||||||||| || |||||||| |||| |
|
|
| T |
4744854 |
tgaaccatgcagttactgcagttggttacggtgtaagtgaagatggaactaagtattggttgattaagaattcttggggtaaaggttggggtgaagaagg |
4744953 |
T |
 |
| Q |
350 |
ctacatgaaggtgctaagggaaagtagtgcaactggaggtcaatgtagcattgctgtacatgctgcttatcc |
421 |
Q |
| |
|
|||||||||| || | ||||||||| ||| | | |||||||||||| ||||||||| ||||||| ||||||| |
|
|
| T |
4744954 |
ctacatgaagttgttgagggaaagtggtgaaccaggaggtcaatgtggcattgctgcacatgcttcttatcc |
4745025 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 26511205 - 26511105
Alignment:
| Q |
89 |
aacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaagataataaataacggttaaacacgttctttt |
188 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||| |||| | ||||||| ||||||||| || |||||||||| |||||| | |||||||| |
|
|
| T |
26511205 |
aacacttttgcatgaagaccttggagactacattcaacatagatgaagtttcatttcaaacatgcagaatgtaataaataatagttaaatatgttctttt |
26511106 |
T |
 |
| Q |
189 |
a |
189 |
Q |
| |
|
| |
|
|
| T |
26511105 |
a |
26511105 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 16118418 - 16118585
Alignment:
| Q |
23 |
caaccgcatatttgtaataacctatgtttgtggatgtagaaaacaaagagaatttta-gtggtttttaacacttttgcacgaagaccttggagactaagc |
121 |
Q |
| |
|
||||| ||||||||||||| | |||| || || | ||||||| |||||||||||| | ||| |||||||| ||||| ||||||||| || |||| || | |
|
|
| T |
16118418 |
caaccacatatttgtaatagcatatgcttatgaacgtagaaagcaaagagaatttgaagtgatttttaacccttttacacgaagacttttgagattatgt |
16118517 |
T |
 |
| Q |
122 |
tcaacatggatgtaacttcattttaaacatgcaaaagataataaataacggttaaacacgttctttta |
189 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| ||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
16118518 |
tcaacatgaatgaaacttcattttaaacatggaaaaggtaataaataatggttaaacatattctttta |
16118585 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 20996048 - 20995934
Alignment:
| Q |
45 |
tatgtttgtggatgtagaaaacaaagagaatttta-gtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcatt |
143 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| | |||||||| | || ||| | |||||||||||||||| | | ||||| |||| ||||||||| |
|
|
| T |
20996048 |
tatgcttgtggatgtagaaaacaaattgaatttgaagtggttttgcaaacatttaaataaagaccttggagactatgttgaacattgatggaacttcatt |
20995949 |
T |
 |
| Q |
144 |
ttaaacatgcaaaag |
158 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
20995948 |
ttaaacatgcaaaag |
20995934 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 32055037 - 32054981
Alignment:
| Q |
124 |
aacatggatgtaacttcattttaaacatgcaaaagataataaataacggttaaacac |
180 |
Q |
| |
|
|||||| ||| |||||||| | ||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
32055037 |
aacatgtatgaaacttcatctcaaacatgcaaatgataataaataacagttaaacac |
32054981 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 170
Target Start/End: Original strand, 20996801 - 20996892
Alignment:
| Q |
79 |
agtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaagataataaataac |
170 |
Q |
| |
|
|||| |||| ||||||||||||||| | || ||| ||| | |||||||||||| ||||| |||| ||||| ||||||| ||||||||||| |
|
|
| T |
20996801 |
agtgtttttcaacacttttgcacgagatcgttcgaggctacgttcaacatggatgaaactttatttcaaacacgcaaaaggtaataaataac |
20996892 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 5e-27; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 9024955 - 9025081
Alignment:
| Q |
45 |
tatgtttgtggatgtagaaaacaaagaga-attttagtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcatt |
143 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| ||||||||| |||||||||||| ||| ||||||||||||| | | || ||||||| ||||||||| |
|
|
| T |
9024955 |
tatgtttgtggatgtagaaaacagagagatattgaagtggttttcaacacttttgcatgaacaccttggagactacgttgaagatggatgaaacttcatt |
9025054 |
T |
 |
| Q |
144 |
ttaaacatgcaaaagataataaataac |
170 |
Q |
| |
|
| |||||||||||| ||||||||||| |
|
|
| T |
9025055 |
tcaaacatgcaaaaagtaataaataac |
9025081 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 22581275 - 22581348
Alignment:
| Q |
84 |
tttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaa |
157 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |||| | | |||||||||| || ||||||||||||||| |||| |
|
|
| T |
22581275 |
tttttaacacttttgcatgaagatcttggaaactacggttaacatggatgaaagttcattttaaacatggaaaa |
22581348 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 30334968 - 30335030
Alignment:
| Q |
39 |
ataacctatgtttgtggatgtagaaaacaaagagaattt-tagtggtttttaacacttttgca |
100 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
30334968 |
ataacatatgcttgtggatgtagaaaacaaagagaatttcaagtggttttccacacttttgca |
30335030 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 5987697 - 5987760
Alignment:
| Q |
128 |
tggatgtaacttcattttaaacatgcaaaagataataaataacggttaaacacgttcttttaaa |
191 |
Q |
| |
|
|||||| |||||| ||| ||||||||||||| ||||||||||| || |||||| || ||||||| |
|
|
| T |
5987697 |
tggatgaaacttcgtttcaaacatgcaaaaggtaataaataacagtcaaacacatttttttaaa |
5987760 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 32 - 189
Target Start/End: Original strand, 33137403 - 33137561
Alignment:
| Q |
32 |
atttgtaataacctatgtttgtggatgtagaaaacaaagagaatttta-gtggtttttaacacttttgcacgaagaccttggagactaagctcaacatgg |
130 |
Q |
| |
|
|||| ||||| | ||| ||||||||| ||||||||||||||||||| | |||||||| ||||||||||| ||| | |||||| || ||| |||||| |
|
|
| T |
33137403 |
atttataatagcatatatttgtggatatagaaaacaaagagaatttgaagtggttttccacacttttgcatgaataaattggaggttacgctgaacatga |
33137502 |
T |
 |
| Q |
131 |
atgtaacttcattttaaacatgcaaaagataataaataacggttaaacacgttctttta |
189 |
Q |
| |
|
||| |||||||| | |||||| |||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
33137503 |
atgaaacttcatgtcaaacattcaaaaggtaataaataacaattaaacacgttttttta |
33137561 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 179
Target Start/End: Complemental strand, 33137048 - 33136950
Alignment:
| Q |
81 |
tggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaagataataaataacggttaaaca |
179 |
Q |
| |
|
||||||| |||||| |||| || |||||| || ||| | |||||||||||| |||||||||| ||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
33137048 |
tggttttcaacactgttgcctgacgacctttgatgctacgttcaacatggatgaaacttcatttcaaatatgcaaaaggtaataaataaccgttaaaca |
33136950 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 51 - 187
Target Start/End: Original strand, 12658988 - 12659123
Alignment:
| Q |
51 |
tgtggatgtagaaaacaaagagaatttta-gtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaac |
149 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||| |||||||||||| ||||||||| ||| || | | |||||||||| || ||||||| |||| |
|
|
| T |
12658988 |
tgtggatgtagaaaacaaagagaatttgaagtggttttcaacacttttgcatgaagaccttcgaggatacgttgaacatggatgaaatttcatttcaaac |
12659087 |
T |
 |
| Q |
150 |
atgcaaaagataataaataacggttaaacacgttcttt |
187 |
Q |
| |
|
||| |||| |||||||||| ||||||||| |||||| |
|
|
| T |
12659088 |
atg-aaaatgtaataaataa-agttaaacacattcttt |
12659123 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 251 - 340
Target Start/End: Complemental strand, 8136360 - 8136271
Alignment:
| Q |
251 |
gaaccatgcagttactataattggttatggggtaagtgatgaagggaagaagtattggttgattaagaattcttggggtgaaacatgggg |
340 |
Q |
| |
|
|||||||| ||| ||||| | ||||| |||||||||||||| |||| ||| || ||| | ||||| |||||||||||||||| |||||| |
|
|
| T |
8136360 |
gaaccatgttgttgctatagtgggttacggggtaagtgatgatgggaggaaataatggataattaaaaattcttggggtgaaagatgggg |
8136271 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 6396167 - 6396212
Alignment:
| Q |
144 |
ttaaacatgcaaaagataataaataacggttaaacacgttctttta |
189 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||| |||||||| |
|
|
| T |
6396167 |
ttaaacatgaaaaagataataaataatagttaaacacattctttta |
6396212 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 152
Target Start/End: Complemental strand, 8589144 - 8589030
Alignment:
| Q |
40 |
taacctatgtttgtggatgtagaaaacaaagagaatttta--gtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaac |
137 |
Q |
| |
|
|||| |||||||||| ||||||| |||||| | || |||| |||||||| |||||||||||| |||||| |||||| ||| | |||||||||| ||| |
|
|
| T |
8589144 |
taacatatgtttgtgcatgtagacaacaaataaaaatttaaggtggttttcaacacttttgcatgaagactttggaggctacattgaacatggatgaaac |
8589045 |
T |
 |
| Q |
138 |
ttcattttaaacatg |
152 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8589044 |
ttcattttaaacatg |
8589030 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 189
Target Start/End: Complemental strand, 19828191 - 19828081
Alignment:
| Q |
79 |
agtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaagataataaataacggttaaac |
178 |
Q |
| |
|
|||| |||| ||||||||| || ||| | |||| || ||| | ||||||| |||| | |||||||| ||| |||||||||||||||||||| ||||||| |
|
|
| T |
19828191 |
agtgattttcaacacttttccatgaaaatcttgaaggctaggttcaacatcgatgaatcttcatttcaaatatgcaaaagataataaataatagttaaac |
19828092 |
T |
 |
| Q |
179 |
acgttctttta |
189 |
Q |
| |
|
|| |||||||| |
|
|
| T |
19828091 |
acattctttta |
19828081 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 19043767 - 19043815
Alignment:
| Q |
29 |
catatttgtaataacctatgtttgtggatgtagaaaacaaagagaattt |
77 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||||||||||||||||||| |
|
|
| T |
19043767 |
catatttgtaataacatatgcttgtgggtgtagaaaacaaagagaattt |
19043815 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 19828480 - 19828608
Alignment:
| Q |
45 |
tatgtttgtggatgtagaaaacaaagagaatttta-gtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcatt |
143 |
Q |
| |
|
|||| ||||||| | |||||||||||| ||||| | ||||||||| ||||||||| | ||||||||| || ||| | | |||||| ||| || ||| || |
|
|
| T |
19828480 |
tatgcttgtggacgaagaaaacaaagacaatttgaagtggtttttcacacttttgaatgaagaccttcgatgctacgttgaacatgcatgaaatttcgtt |
19828579 |
T |
 |
| Q |
144 |
ttaaacatgcaaaagataataaataacgg |
172 |
Q |
| |
|
| ||||||||||||| | ||| ||||||| |
|
|
| T |
19828580 |
tcaaacatgcaaaaggttatagataacgg |
19828608 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 41982511 - 41982598
Alignment:
| Q |
14 |
agatgaaagcaaccgcatatttgtaataacctatgtttgtggatgtagaaaacaaagagaattt-tagtggtttttaacacttttgca |
100 |
Q |
| |
|
||||| || ||||| ||||||||||||| | |||| ||| | |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41982511 |
agatggaaacaaccacatatttgtaatagcatatgcttgggaatgtagaaaacaaagagaatttgaagtggtttttaacacttttgca |
41982598 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 41982597 - 41982660
Alignment:
| Q |
126 |
catggatgtaacttcattttaaacatgcaaaagataataaataacggttaaacacgttctttta |
189 |
Q |
| |
|
|||| ||| ||||| |||| ||||||| ||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
41982597 |
catgaatgaaacttaatttcaaacatgtaaaaggtaataaataacagttaaacatgttctttta |
41982660 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 53114193 - 53114290
Alignment:
| Q |
93 |
cttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaagataataaat-aacggttaaacacgttctttta |
189 |
Q |
| |
|
||||| || |||||| || ||||||| | ||||||| |||| || ||||||| ||||||||||| | |||||||| ||| |||||||||||||||||| |
|
|
| T |
53114193 |
cttttacatgaagacttttgagactacgttcaacatcgatgaaaattcatttcaaacatgcaaatggtaataaataaacagttaaacacgttctttta |
53114290 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 152
Target Start/End: Original strand, 27647352 - 27647449
Alignment:
| Q |
56 |
atgtagaaaacaaagagaatttt-agtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatg |
152 |
Q |
| |
|
|||||||||||||| |||||||| ||| ||||| |||||||||||| || |||||| ||| ||| | | || | |||| |||||||||| ||||||| |
|
|
| T |
27647352 |
atgtagaaaacaaaaagaattttaagtagttttcaacacttttgcatgacgacctttgaggctacgttgaatacagatgaaacttcatttcaaacatg |
27647449 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University