View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12822_low_1 (Length: 656)

Name: NF12822_low_1
Description: NF12822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12822_low_1
NF12822_low_1
[»] chr2 (5 HSPs)
chr2 (192-481)||(4736285-4736574)
chr2 (14-189)||(4732939-4733115)
chr2 (522-641)||(4736557-4736676)
chr2 (250-421)||(4744854-4745025)
chr2 (89-189)||(26511105-26511205)
[»] chr6 (4 HSPs)
chr6 (23-189)||(16118418-16118585)
chr6 (45-158)||(20995934-20996048)
chr6 (124-180)||(32054981-32055037)
chr6 (79-170)||(20996801-20996892)
[»] chr7 (4 HSPs)
chr7 (45-170)||(9024955-9025081)
chr7 (84-157)||(22581275-22581348)
chr7 (39-100)||(30334968-30335030)
chr7 (128-191)||(5987697-5987760)
[»] chr8 (2 HSPs)
chr8 (32-189)||(33137403-33137561)
chr8 (81-179)||(33136950-33137048)
[»] chr1 (3 HSPs)
chr1 (51-187)||(12658988-12659123)
chr1 (251-340)||(8136271-8136360)
chr1 (144-189)||(6396167-6396212)
[»] chr5 (4 HSPs)
chr5 (40-152)||(8589030-8589144)
chr5 (79-189)||(19828081-19828191)
chr5 (29-77)||(19043767-19043815)
chr5 (45-172)||(19828480-19828608)
[»] chr4 (2 HSPs)
chr4 (14-100)||(41982511-41982598)
chr4 (126-189)||(41982597-41982660)
[»] chr3 (2 HSPs)
chr3 (93-189)||(53114193-53114290)
chr3 (56-152)||(27647352-27647449)


Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-157; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 192 - 481
Target Start/End: Original strand, 4736285 - 4736574
Alignment:
192 agttatgattttcatcactacatgggaggggtttatgaaggaagttgtggacccaagttgaaccatgcagttactataattggttatggggtaagtgatg 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
4736285 agttatgattttcatcactacatgggaggggtttatgaaggaagttgtggacccaagttgaaccatgcagttactataattggttatggggtaagtgaag 4736384  T
292 aagggaagaagtattggttgattaagaattcttggggtgaaacatggggtgagaaaggctacatgaaggtgctaagggaaagtagtgcaactggaggtca 391  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4736385 cagggaagaagtattggttgattaagaattcttggggtgaaacatggggtgagaaaggctacatgaaggtgctaagggaaagtagtgcaactggaggtca 4736484  T
392 atgtagcattgctgtacatgctgcttatcctactatatagtactactttttgatgaattttataatatgatgtaataataagaataagtt 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4736485 atgtagcattgctgtacatgctgcttatcctactatatagtactactttttgatgaattttataatatgatgtaataataagaataagtt 4736574  T

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Target: chr2; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 4732939 - 4733115
Alignment:
14 agatgaaagcaaccgcatatttgtaataacctatgtttgtggatgtagaaaacaaagagaattt-tagtggtttttaacacttttgcacgaagaccttgg 112  Q
    |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
4732939 agatgaaagcaaccacatatttataataacatatgtttgtggatgtagaaaacaaagagaatttatagtggtttttaacacttttgcacgaagaccttgg 4733038  T
113 agactaagctcaacatggatgtaacttcattttaaacatgcaaaagataataaataacggtt-aaacacgttctttta 189  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||| ||||||||    
4733039 agactaagctcaacatggatgtaacttca-tttaaacatgcaaaagataataaataacagttaaaacacattctttta 4733115  T

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Target: chr2; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 522 - 641
Target Start/End: Original strand, 4736557 - 4736676
Alignment:
522 taataataagaataagtttcctttattgtccttaatacggagaagatttgaaatgcaatgaaaaaagctcctcaagttgtacagagtacagacccgtgtg 621  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
4736557 taataataagaataagtttcctttgttgtccttaatacggagaagatttgaaatgcaatgaaaaaagctcctcaagttgtagagagtacagacccgtgtg 4736656  T
622 attcgtcctagctaaattct 641  Q
    ||||||||||||||||||||    
4736657 attcgtcctagctaaattct 4736676  T

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Target: chr2; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 250 - 421
Target Start/End: Original strand, 4744854 - 4745025
Alignment:
250 tgaaccatgcagttactataattggttatggggtaagtgatgaagggaagaagtattggttgattaagaattcttggggtgaaacatggggtgagaaagg 349  Q
    |||||||||||||||||  | ||||||| || |||||||| || || |  |||||||||||||||||||||||||||||| ||   ||||||||  ||||    
4744854 tgaaccatgcagttactgcagttggttacggtgtaagtgaagatggaactaagtattggttgattaagaattcttggggtaaaggttggggtgaagaagg 4744953  T
350 ctacatgaaggtgctaagggaaagtagtgcaactggaggtcaatgtagcattgctgtacatgctgcttatcc 421  Q
    |||||||||| || | ||||||||| ||| | | |||||||||||| ||||||||| ||||||| |||||||    
4744954 ctacatgaagttgttgagggaaagtggtgaaccaggaggtcaatgtggcattgctgcacatgcttcttatcc 4745025  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 26511205 - 26511105
Alignment:
89 aacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaagataataaataacggttaaacacgttctttt 188  Q
    |||||||||||| |||||||||||||||||   ||||||| |||| |  ||||||| ||||||||| ||  ||||||||||  |||||| | ||||||||    
26511205 aacacttttgcatgaagaccttggagactacattcaacatagatgaagtttcatttcaaacatgcagaatgtaataaataatagttaaatatgttctttt 26511106  T
189 a 189  Q
    |    
26511105 a 26511105  T

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Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 16118418 - 16118585
Alignment:
23 caaccgcatatttgtaataacctatgtttgtggatgtagaaaacaaagagaatttta-gtggtttttaacacttttgcacgaagaccttggagactaagc 121  Q
    ||||| ||||||||||||| | |||| || || | ||||||| |||||||||||| | ||| |||||||| ||||| ||||||||| || |||| || |     
16118418 caaccacatatttgtaatagcatatgcttatgaacgtagaaagcaaagagaatttgaagtgatttttaacccttttacacgaagacttttgagattatgt 16118517  T
122 tcaacatggatgtaacttcattttaaacatgcaaaagataataaataacggttaaacacgttctttta 189  Q
    |||||||| ||| |||||||||||||||||| ||||| |||||||||| |||||||||  ||||||||    
16118518 tcaacatgaatgaaacttcattttaaacatggaaaaggtaataaataatggttaaacatattctttta 16118585  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 20996048 - 20995934
Alignment:
45 tatgtttgtggatgtagaaaacaaagagaatttta-gtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcatt 143  Q
    |||| ||||||||||||||||||||  |||||| | ||||||||  | || |||  |  |||||||||||||||| | | ||||| |||| |||||||||    
20996048 tatgcttgtggatgtagaaaacaaattgaatttgaagtggttttgcaaacatttaaataaagaccttggagactatgttgaacattgatggaacttcatt 20995949  T
144 ttaaacatgcaaaag 158  Q
    |||||||||||||||    
20995948 ttaaacatgcaaaag 20995934  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 32055037 - 32054981
Alignment:
124 aacatggatgtaacttcattttaaacatgcaaaagataataaataacggttaaacac 180  Q
    |||||| ||| |||||||| | ||||||||||| ||||||||||||| |||||||||    
32055037 aacatgtatgaaacttcatctcaaacatgcaaatgataataaataacagttaaacac 32054981  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 170
Target Start/End: Original strand, 20996801 - 20996892
Alignment:
79 agtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaagataataaataac 170  Q
    |||| |||| |||||||||||||||   | || ||| ||| | |||||||||||| ||||| |||| ||||| ||||||| |||||||||||    
20996801 agtgtttttcaacacttttgcacgagatcgttcgaggctacgttcaacatggatgaaactttatttcaaacacgcaaaaggtaataaataac 20996892  T

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Target: chr7 (Bit Score: 63; Significance: 5e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 9024955 - 9025081
Alignment:
45 tatgtttgtggatgtagaaaacaaagaga-attttagtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcatt 143  Q
    ||||||||||||||||||||||| ||||| |||  ||||||||| |||||||||||| ||| ||||||||||||| | | || ||||||| |||||||||    
9024955 tatgtttgtggatgtagaaaacagagagatattgaagtggttttcaacacttttgcatgaacaccttggagactacgttgaagatggatgaaacttcatt 9025054  T
144 ttaaacatgcaaaagataataaataac 170  Q
    | ||||||||||||  |||||||||||    
9025055 tcaaacatgcaaaaagtaataaataac 9025081  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 22581275 - 22581348
Alignment:
84 tttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaa 157  Q
    ||||||||||||||||| ||||| |||||| |||| | | |||||||||| || ||||||||||||||| ||||    
22581275 tttttaacacttttgcatgaagatcttggaaactacggttaacatggatgaaagttcattttaaacatggaaaa 22581348  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 30334968 - 30335030
Alignment:
39 ataacctatgtttgtggatgtagaaaacaaagagaattt-tagtggtttttaacacttttgca 100  Q
    ||||| |||| ||||||||||||||||||||||||||||  |||||||||  |||||||||||    
30334968 ataacatatgcttgtggatgtagaaaacaaagagaatttcaagtggttttccacacttttgca 30335030  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 5987697 - 5987760
Alignment:
128 tggatgtaacttcattttaaacatgcaaaagataataaataacggttaaacacgttcttttaaa 191  Q
    |||||| |||||| ||| ||||||||||||| ||||||||||| || |||||| || |||||||    
5987697 tggatgaaacttcgtttcaaacatgcaaaaggtaataaataacagtcaaacacatttttttaaa 5987760  T

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Target: chr8 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 32 - 189
Target Start/End: Original strand, 33137403 - 33137561
Alignment:
32 atttgtaataacctatgtttgtggatgtagaaaacaaagagaatttta-gtggtttttaacacttttgcacgaagaccttggagactaagctcaacatgg 130  Q
    |||| ||||| | ||| ||||||||| ||||||||||||||||||| | ||||||||  ||||||||||| ||| |  ||||||  || ||| ||||||     
33137403 atttataatagcatatatttgtggatatagaaaacaaagagaatttgaagtggttttccacacttttgcatgaataaattggaggttacgctgaacatga 33137502  T
131 atgtaacttcattttaaacatgcaaaagataataaataacggttaaacacgttctttta 189  Q
    ||| |||||||| | |||||| |||||| |||||||||||  ||||||||||| |||||    
33137503 atgaaacttcatgtcaaacattcaaaaggtaataaataacaattaaacacgttttttta 33137561  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 179
Target Start/End: Complemental strand, 33137048 - 33136950
Alignment:
81 tggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaagataataaataacggttaaaca 179  Q
    ||||||| |||||| ||||  || |||||| ||  ||| | |||||||||||| |||||||||| ||| ||||||||| ||||||||||| ||||||||    
33137048 tggttttcaacactgttgcctgacgacctttgatgctacgttcaacatggatgaaacttcatttcaaatatgcaaaaggtaataaataaccgttaaaca 33136950  T

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Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 51 - 187
Target Start/End: Original strand, 12658988 - 12659123
Alignment:
51 tgtggatgtagaaaacaaagagaatttta-gtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaac 149  Q
    ||||||||||||||||||||||||||| | |||||||| |||||||||||| ||||||||| |||  || | | |||||||||| || ||||||| ||||    
12658988 tgtggatgtagaaaacaaagagaatttgaagtggttttcaacacttttgcatgaagaccttcgaggatacgttgaacatggatgaaatttcatttcaaac 12659087  T
150 atgcaaaagataataaataacggttaaacacgttcttt 187  Q
    ||| ||||  ||||||||||  ||||||||| ||||||    
12659088 atg-aaaatgtaataaataa-agttaaacacattcttt 12659123  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 251 - 340
Target Start/End: Complemental strand, 8136360 - 8136271
Alignment:
251 gaaccatgcagttactataattggttatggggtaagtgatgaagggaagaagtattggttgattaagaattcttggggtgaaacatgggg 340  Q
    ||||||||  ||| ||||| | ||||| |||||||||||||| |||| ||| || ||| | ||||| |||||||||||||||| ||||||    
8136360 gaaccatgttgttgctatagtgggttacggggtaagtgatgatgggaggaaataatggataattaaaaattcttggggtgaaagatgggg 8136271  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 6396167 - 6396212
Alignment:
144 ttaaacatgcaaaagataataaataacggttaaacacgttctttta 189  Q
    ||||||||| ||||||||||||||||  ||||||||| ||||||||    
6396167 ttaaacatgaaaaagataataaataatagttaaacacattctttta 6396212  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 152
Target Start/End: Complemental strand, 8589144 - 8589030
Alignment:
40 taacctatgtttgtggatgtagaaaacaaagagaatttta--gtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaac 137  Q
    |||| |||||||||| ||||||| |||||| | || ||||  |||||||| |||||||||||| |||||| |||||| |||   | |||||||||| |||    
8589144 taacatatgtttgtgcatgtagacaacaaataaaaatttaaggtggttttcaacacttttgcatgaagactttggaggctacattgaacatggatgaaac 8589045  T
138 ttcattttaaacatg 152  Q
    |||||||||||||||    
8589044 ttcattttaaacatg 8589030  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 189
Target Start/End: Complemental strand, 19828191 - 19828081
Alignment:
79 agtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaagataataaataacggttaaac 178  Q
    |||| |||| ||||||||| || ||| | |||| || ||| | ||||||| |||| | |||||||| ||| ||||||||||||||||||||  |||||||    
19828191 agtgattttcaacacttttccatgaaaatcttgaaggctaggttcaacatcgatgaatcttcatttcaaatatgcaaaagataataaataatagttaaac 19828092  T
179 acgttctttta 189  Q
    || ||||||||    
19828091 acattctttta 19828081  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 19043767 - 19043815
Alignment:
29 catatttgtaataacctatgtttgtggatgtagaaaacaaagagaattt 77  Q
    ||||||||||||||| |||| |||||| |||||||||||||||||||||    
19043767 catatttgtaataacatatgcttgtgggtgtagaaaacaaagagaattt 19043815  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 19828480 - 19828608
Alignment:
45 tatgtttgtggatgtagaaaacaaagagaatttta-gtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcatt 143  Q
    |||| ||||||| | |||||||||||| ||||| | ||||||||| ||||||||| | ||||||||| ||  ||| | | |||||| ||| || ||| ||    
19828480 tatgcttgtggacgaagaaaacaaagacaatttgaagtggtttttcacacttttgaatgaagaccttcgatgctacgttgaacatgcatgaaatttcgtt 19828579  T
144 ttaaacatgcaaaagataataaataacgg 172  Q
    | ||||||||||||| | ||| |||||||    
19828580 tcaaacatgcaaaaggttatagataacgg 19828608  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 41982511 - 41982598
Alignment:
14 agatgaaagcaaccgcatatttgtaataacctatgtttgtggatgtagaaaacaaagagaattt-tagtggtttttaacacttttgca 100  Q
    ||||| || ||||| ||||||||||||| | |||| ||| | ||||||||||||||||||||||  ||||||||||||||||||||||    
41982511 agatggaaacaaccacatatttgtaatagcatatgcttgggaatgtagaaaacaaagagaatttgaagtggtttttaacacttttgca 41982598  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 41982597 - 41982660
Alignment:
126 catggatgtaacttcattttaaacatgcaaaagataataaataacggttaaacacgttctttta 189  Q
    |||| ||| ||||| |||| ||||||| ||||| ||||||||||| |||||||| |||||||||    
41982597 catgaatgaaacttaatttcaaacatgtaaaaggtaataaataacagttaaacatgttctttta 41982660  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 53114193 - 53114290
Alignment:
93 cttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatgcaaaagataataaat-aacggttaaacacgttctttta 189  Q
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53114193 cttttacatgaagacttttgagactacgttcaacatcgatgaaaattcatttcaaacatgcaaatggtaataaataaacagttaaacacgttctttta 53114290  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 152
Target Start/End: Original strand, 27647352 - 27647449
Alignment:
56 atgtagaaaacaaagagaatttt-agtggtttttaacacttttgcacgaagaccttggagactaagctcaacatggatgtaacttcattttaaacatg 152  Q
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27647352 atgtagaaaacaaaaagaattttaagtagttttcaacacttttgcatgacgacctttgaggctacgttgaatacagatgaaacttcatttcaaacatg 27647449  T

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