View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12822_low_10 (Length: 357)
Name: NF12822_low_10
Description: NF12822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12822_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 161 - 346
Target Start/End: Complemental strand, 31856936 - 31856750
Alignment:
| Q |
161 |
tatatgcttcaattcgtcaatgactaaatggagtcatttcaaaatttggtttgtaattacagcttcattctagcctaacctaccaaactatcaaacttgg |
260 |
Q |
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| T |
31856936 |
tatatgcttcaattcgtcaatgactaaatgtagtcatttcaaaatttggtttataatcacagcttcattctagcctaacctaccaaactatcaaacttgg |
31856837 |
T |
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| Q |
261 |
gcaagtaacaaaacaagactatatcaatagaattgttgagtagtcaaggtagttgaactcct-atatgcatattcaaatctacctat |
346 |
Q |
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| T |
31856836 |
gcaagtaacaaaacaagactatatcaatagaattgttgagtagtcaaggtagttgaactcctaatatgcatattcaaatctacctat |
31856750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 31857447 - 31857343
Alignment:
| Q |
18 |
taattaaattaaaatgtgataataaacggttgcactttgaccccgcaacaataccgccacatcttgtatccttctctaacttcatgtcatcaatttctcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
31857447 |
taattaaattaaaatgtgataataaacggttgcactttgaccccacaacaataccgccacatcttgtatccttcactaacttcaattcatcaatttctcc |
31857348 |
T |
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| Q |
118 |
ttcat |
122 |
Q |
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||||| |
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| T |
31857347 |
ttcat |
31857343 |
T |
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