View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12822_low_11 (Length: 269)
Name: NF12822_low_11
Description: NF12822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12822_low_11 |
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| [»] scaffold0204 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 8315008 - 8315246
Alignment:
| Q |
11 |
cagagacaaaccgtcgtatgcgatatggtttatgaaccgacaaccaacacatatcagattcacgtaccaatcacccctgcaaccaaagagcaagcatcac |
110 |
Q |
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| T |
8315008 |
cagagacaaaccgtcgtatgcgatatggtttatgaaccgacagccaacacatatcagattcacgtaccaatcacccctgcaaccaaacagtaagcatcac |
8315107 |
T |
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| Q |
111 |
agccctctcgagcttcccaatccacgcctaacatttacacaacgttgaaggcgaaggacacagaacagagactcccacaacgttgctctattctttatga |
210 |
Q |
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| T |
8315108 |
agccctcttgagcttcccaatccacgcctaacatttacacaacgttgaaggcgaaggacacagaacagagactcccacaacgttgctctattctttatga |
8315207 |
T |
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| Q |
211 |
gctggaagaaaaatcaatagatggaaagattgatgaatg |
249 |
Q |
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| T |
8315208 |
gctggaagaaaaatcaatagatggaaagattgatgaatg |
8315246 |
T |
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Target: scaffold0204 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 13582 - 13406
Alignment:
| Q |
11 |
cagagacaaaccgtcgtatgcgatatggtttatgaaccgacaaccaacacatatcagattcacgtaccaatcacccctgcaaccaaagagcaagcatcac |
110 |
Q |
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| T |
13582 |
cagagacaaactgtcgtaagcagtatggtttatgaaccgacatccaacacatatcagattcacgtaccaaccacccctgcaaccaaacagcaagcatcac |
13483 |
T |
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| Q |
111 |
agccctctcgagcttcccaatccacgcctaacatttacacaacgttgaaggcgaaggacacagaacagagactccca |
187 |
Q |
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| T |
13482 |
aaccctctcgagcttcccaatccacgcctaacatttacacaacgttgaaggtgaaggacacaaaacaaagactccca |
13406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 4159682 - 4159593
Alignment:
| Q |
34 |
tatggtttatgaaccgacaaccaacacatatcagattcacgtaccaatcacccctgcaaccaaagagcaagcatcacagccctctcgagc |
123 |
Q |
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| T |
4159682 |
tatggtttatgaactgacccccaacacagattaaattcacgtaacaaccgcccctgcaacaaaagagcaagcatcacagccctctcgagc |
4159593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 25899065 - 25899018
Alignment:
| Q |
32 |
gatatggtttatgaaccgacaaccaacacatatcagattcacgtacca |
79 |
Q |
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| T |
25899065 |
gatatggtttatgaaccgactgccaacacatatcaaattcatgtacca |
25899018 |
T |
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