View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12822_low_12 (Length: 264)
Name: NF12822_low_12
Description: NF12822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12822_low_12 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 41969129 - 41968926
Alignment:
| Q |
18 |
aatcacaagtataatatttataaacttgatcaagggttttccgcgatttcgattgttatggatgctgccaaaacattgcacaattaccctcaccatttac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
41969129 |
aatcacaagtataatatttataaacttgatcaagggttttccgcgatttcgattgttaccggtgctgccaaaacattgcacaattaccctcaccatttac |
41969030 |
T |
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| Q |
118 |
tcccactcacctcactttattcgttataggttcttctttctcacttcttttccaatgtaacaatactcaagcatggaaccacaaattcataaacttaaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41969029 |
tcccactcacctcactttattcgttataggttctt-----------cttttccaatgtaacaatactcaagcatggaaccacgaattcataaacttaaaa |
41968941 |
T |
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| Q |
218 |
aatctcatctctaaa |
232 |
Q |
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|||||||||| |||| |
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| T |
41968940 |
aatctcatctataaa |
41968926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 86 - 232
Target Start/End: Original strand, 3722450 - 3722597
Alignment:
| Q |
86 |
caaaacattgcacaattaccctcaccatttactcccactcacctcactttattcgttataggttcttctttctcacttcttttccaatgtaacaatactc |
185 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||| || ||| |
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| T |
3722450 |
caaaacattgcacaattaccctcaccatttcctctcactcacctcacattattctttataggttcttctttctcacttcttttccaatgtcacggtaccg |
3722549 |
T |
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| Q |
186 |
aagcatggaaccacaaattcataaac-ttaaaaaatctcatctctaaa |
232 |
Q |
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| T |
3722550 |
aattatggaaccactaattcataaacataaaaaaatctcatctctaaa |
3722597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 230
Target Start/End: Complemental strand, 32953742 - 32953608
Alignment:
| Q |
96 |
cacaattaccctcaccatttactcccactcacctcactttattcgttataggttcttctttctcacttcttttccaatgtaacaatactcaagcatggaa |
195 |
Q |
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|||||||||| |||||| |||||| |||||||| |||||||||| || ||||| | |||||| |||| |||| |||||| |||||| | || || | || |
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| T |
32953742 |
cacaattaccttcaccagttactctcactcaccccactttattctttccaggttttactttcttacttatttttcaatgtcacaatattgaaacaagcaa |
32953643 |
T |
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| Q |
196 |
ccacaaattcataaacttaaaaaatctcatctcta |
230 |
Q |
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| T |
32953642 |
caacgaattcataaacaccaaaaatctcatctcta |
32953608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 35739771 - 35739690
Alignment:
| Q |
151 |
ttctttctcacttcttttccaatgtaacaatactcaagcatggaaccacaaattcataaacttaaaaaatctcatctctaaa |
232 |
Q |
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| T |
35739771 |
ttctttctaacttcttttccaatgtcacagaactgaagcatggaaccacaaattcataaacataaaaaatctcatctctaaa |
35739690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 37080806 - 37080878
Alignment:
| Q |
160 |
acttcttttccaatgtaacaatactcaagcatggaaccacaaattcataaacttaaaaaatctcatctctaaa |
232 |
Q |
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|||||||||||| ||| |||||||| ||||| | |||||||||||||||||| || ||||||||||||||| |
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| T |
37080806 |
acttcttttccattgtcacaatactgaagcaagcaaccacaaattcataaacaccaataatctcatctctaaa |
37080878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 232
Target Start/End: Original strand, 7805573 - 7805712
Alignment:
| Q |
93 |
ttgcacaattaccctcaccatttactcccactcacctcactttattcgttataggttcttctttctcacttcttttccaatgtaacaatactcaagcatg |
192 |
Q |
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|||||||||||||||||||| || ||| ||||||||||||||||| || ||||||||||||| |||||||||||||||| || ||||| ||||| | |
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| T |
7805573 |
ttgcacaattaccctcaccactttctctaactcacctcactttattatttcgaggttcttctttcaaacttcttttccaatgtcacgatactgaagcaag |
7805672 |
T |
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| Q |
193 |
gaaccacaaattcataaacttaaaaaatctcatctctaaa |
232 |
Q |
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||| || ||||||||||| ||||||| |||||||||| |
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| T |
7805673 |
caactacgaattcataaacaccaaaaatcccatctctaaa |
7805712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 36033789 - 36033683
Alignment:
| Q |
123 |
ctcacctcactttattcgttataggttcttctttctcacttcttttccaatgtaacaatactcaagcatggaaccacaaattcataaacttaaaaaatct |
222 |
Q |
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|||||| |||||||||| || ||||||| ||| |||||||||||| |||||| ||| |||| ||||| | |||||| ||||||||||| |||||||| |
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| T |
36033789 |
ctcaccccactttattctttccaggttctacttactcacttctttttcaatgtcacattactgaagcaagcaaccacgaattcataaac-acaaaaatct |
36033691 |
T |
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| Q |
223 |
catctcta |
230 |
Q |
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|||||||| |
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| T |
36033690 |
catctcta |
36033683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 228870 - 228951
Alignment:
| Q |
151 |
ttctttctcacttcttttccaatgtaacaatactcaagcatggaaccacaaattcataaacttaaaaaatctcatctctaaa |
232 |
Q |
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|||||||||| |||||||||||||| || |||| ||||| | |||||| |||||||||| ||| |||||||||||||| |
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| T |
228870 |
ttctttctcatttcttttccaatgtcactgtactaaagcaagcaaccacggattcataaacaccaaatatctcatctctaaa |
228951 |
T |
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