View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12822_low_2 (Length: 546)

Name: NF12822_low_2
Description: NF12822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12822_low_2
NF12822_low_2
[»] chr1 (36 HSPs)
chr1 (14-536)||(31745095-31745616)
chr1 (88-234)||(40377012-40377158)
chr1 (88-235)||(7549813-7549960)
chr1 (113-226)||(36393479-36393592)
chr1 (113-234)||(50974564-50974685)
chr1 (88-220)||(45584509-45584641)
chr1 (88-234)||(31652593-31652738)
chr1 (88-235)||(44719151-44719298)
chr1 (113-205)||(4039621-4039713)
chr1 (113-234)||(5851530-5851649)
chr1 (112-218)||(25302066-25302172)
chr1 (88-189)||(25095579-25095680)
chr1 (91-226)||(34596118-34596250)
chr1 (111-199)||(45753443-45753531)
chr1 (140-234)||(12148289-12148383)
chr1 (88-197)||(34445639-34445748)
chr1 (118-226)||(12636305-12636414)
chr1 (113-226)||(40203076-40203189)
chr1 (113-196)||(5115634-5115717)
chr1 (91-197)||(28672315-28672420)
chr1 (111-232)||(5787434-5787554)
chr1 (145-227)||(42850094-42850176)
chr1 (143-220)||(50222611-50222688)
chr1 (113-200)||(33744159-33744246)
chr1 (139-234)||(48947225-48947320)
chr1 (88-229)||(13954126-13954271)
chr1 (118-200)||(39241430-39241512)
chr1 (144-200)||(48253319-48253375)
chr1 (138-217)||(44442270-44442349)
chr1 (114-199)||(3338051-3338137)
chr1 (112-166)||(5597710-5597764)
chr1 (88-150)||(27396102-27396164)
chr1 (135-233)||(50328308-50328405)
chr1 (107-200)||(14774091-14774184)
chr1 (116-189)||(28171517-28171590)
chr1 (153-197)||(15549642-15549686)
[»] chr4 (39 HSPs)
chr4 (88-234)||(49446583-49446730)
chr4 (88-227)||(44646522-44646661)
chr4 (113-226)||(44647879-44647992)
chr4 (89-233)||(42197007-42197150)
chr4 (88-209)||(6316821-6316942)
chr4 (107-219)||(9802621-9802732)
chr4 (116-231)||(20390023-20390138)
chr4 (105-220)||(42844030-42844145)
chr4 (114-234)||(41468080-41468200)
chr4 (116-210)||(33982423-33982517)
chr4 (138-228)||(44088286-44088376)
chr4 (92-200)||(25196110-25196218)
chr4 (130-223)||(50115059-50115149)
chr4 (88-189)||(40480205-40480306)
chr4 (113-200)||(12103864-12103951)
chr4 (113-226)||(24395194-24395308)
chr4 (129-219)||(49144774-49144864)
chr4 (153-234)||(38494748-38494829)
chr4 (88-167)||(28165362-28165442)
chr4 (117-199)||(39727579-39727660)
chr4 (88-200)||(50086432-50086543)
chr4 (116-189)||(34235910-34235984)
chr4 (153-219)||(36721591-36721657)
chr4 (122-231)||(49769110-49769219)
chr4 (130-189)||(31871090-31871149)
chr4 (88-218)||(52373050-52373181)
chr4 (153-235)||(41370157-41370239)
chr4 (129-218)||(1696194-1696283)
chr4 (113-186)||(53919863-53919936)
chr4 (113-205)||(27346293-27346385)
chr4 (111-186)||(5387947-5388022)
chr4 (114-216)||(51105918-51106020)
chr4 (118-167)||(27706954-27707003)
chr4 (111-219)||(27981368-27981477)
chr4 (88-149)||(44088211-44088272)
chr4 (88-217)||(52650697-52650826)
chr4 (112-200)||(11875452-11875539)
chr4 (88-187)||(23230272-23230372)
chr4 (88-200)||(47560596-47560707)
[»] chr3 (29 HSPs)
chr3 (88-234)||(34758899-34759045)
chr3 (89-234)||(54911988-54912133)
chr3 (113-234)||(18399149-18399271)
chr3 (89-226)||(30687077-30687214)
chr3 (88-227)||(27968170-27968307)
chr3 (88-227)||(52340118-52340257)
chr3 (100-218)||(38388694-38388812)
chr3 (88-199)||(28434481-28434591)
chr3 (88-189)||(779710-779810)
chr3 (88-205)||(38704969-38705086)
chr3 (124-222)||(7754772-7754871)
chr3 (113-226)||(4033026-4033138)
chr3 (135-226)||(19898100-19898191)
chr3 (133-200)||(55110042-55110109)
chr3 (89-226)||(25548196-25548333)
chr3 (117-191)||(43749507-43749581)
chr3 (129-199)||(53433211-53433281)
chr3 (116-171)||(1680511-1680566)
chr3 (109-200)||(2831538-2831629)
chr3 (113-197)||(39976721-39976804)
chr3 (133-208)||(54955783-54955859)
chr3 (112-166)||(11404700-11404754)
chr3 (139-189)||(40546348-40546398)
chr3 (359-420)||(9213512-9213572)
chr3 (88-125)||(29497248-29497285)
chr3 (88-133)||(29611990-29612035)
chr3 (144-200)||(21490626-21490682)
chr3 (125-189)||(30463992-30464056)
chr3 (131-171)||(37775371-37775411)
[»] chr5 (25 HSPs)
chr5 (88-231)||(8247037-8247180)
chr5 (88-233)||(3263717-3263862)
chr5 (91-234)||(19692696-19692840)
chr5 (116-227)||(5356295-5356406)
chr5 (114-234)||(35395184-35395304)
chr5 (88-233)||(10051700-10051845)
chr5 (88-229)||(28793305-28793446)
chr5 (90-227)||(1354345-1354481)
chr5 (116-234)||(22473432-22473551)
chr5 (113-209)||(21582367-21582463)
chr5 (95-197)||(14042440-14042542)
chr5 (114-211)||(31889611-31889709)
chr5 (88-171)||(4725897-4725979)
chr5 (143-229)||(142350-142436)
chr5 (111-165)||(22871913-22871967)
chr5 (112-197)||(3758194-3758279)
chr5 (125-197)||(26663642-26663714)
chr5 (125-197)||(26935237-26935309)
chr5 (91-226)||(14474998-14475133)
chr5 (88-166)||(27650866-27650944)
chr5 (114-167)||(37976444-37976497)
chr5 (112-166)||(12933327-12933381)
chr5 (125-171)||(24241210-24241256)
chr5 (140-197)||(24241039-24241096)
chr5 (175-235)||(43145883-43145943)
[»] chr2 (27 HSPs)
chr2 (88-235)||(8789826-8789973)
chr2 (88-233)||(44941072-44941216)
chr2 (88-231)||(20682990-20683133)
chr2 (113-227)||(8773670-8773784)
chr2 (111-209)||(4238341-4238438)
chr2 (111-234)||(18053008-18053130)
chr2 (113-226)||(42945012-42945125)
chr2 (88-199)||(6761751-6761862)
chr2 (116-226)||(2393038-2393148)
chr2 (113-227)||(34546265-34546379)
chr2 (100-226)||(42966938-42967066)
chr2 (126-198)||(1070568-1070639)
chr2 (88-233)||(5961954-5962101)
chr2 (386-469)||(10069229-10069312)
chr2 (88-202)||(3882586-3882700)
chr2 (91-183)||(433551-433643)
chr2 (112-164)||(8898861-8898913)
chr2 (88-200)||(18227092-18227204)
chr2 (114-197)||(2825983-2826066)
chr2 (100-167)||(13442636-13442703)
chr2 (116-200)||(35228732-35228816)
chr2 (113-171)||(3199541-3199599)
chr2 (111-218)||(7271769-7271880)
chr2 (89-226)||(14102297-14102435)
chr2 (112-197)||(31448315-31448400)
chr2 (118-171)||(45212057-45212110)
chr2 (112-200)||(33275918-33276005)
[»] chr7 (30 HSPs)
chr7 (114-234)||(30412910-30413030)
chr7 (88-234)||(8170001-8170147)
chr7 (124-234)||(48137789-48137899)
chr7 (113-207)||(42493703-42493798)
chr7 (88-219)||(47507580-47507711)
chr7 (92-230)||(38452146-38452283)
chr7 (118-215)||(2964049-2964146)
chr7 (88-220)||(16878677-16878809)
chr7 (115-226)||(44391426-44391537)
chr7 (154-230)||(46684550-46684626)
chr7 (111-202)||(5248088-5248179)
chr7 (113-205)||(2741168-2741260)
chr7 (111-229)||(15034793-15034911)
chr7 (116-224)||(43670409-43670517)
chr7 (159-234)||(47305516-47305592)
chr7 (108-197)||(676400-676488)
chr7 (100-199)||(37352436-37352535)
chr7 (105-189)||(33887887-33887971)
chr7 (88-232)||(36015002-36015141)
chr7 (114-228)||(36285774-36285887)
chr7 (88-171)||(45375399-45375483)
chr7 (153-200)||(15995924-15995971)
chr7 (91-200)||(35754017-35754126)
chr7 (140-216)||(44495238-44495314)
chr7 (153-200)||(14574768-14574815)
chr7 (82-189)||(35599837-35599944)
chr7 (111-200)||(31477085-31477175)
chr7 (87-200)||(10031945-10032058)
chr7 (110-163)||(25120218-25120271)
chr7 (159-226)||(27359398-27359466)
[»] chr8 (18 HSPs)
chr8 (88-234)||(31206280-31206426)
chr8 (118-226)||(38956884-38956992)
chr8 (111-235)||(5217747-5217869)
chr8 (113-218)||(45368729-45368834)
chr8 (114-227)||(5020051-5020162)
chr8 (115-226)||(20169716-20169827)
chr8 (88-229)||(9632898-9633040)
chr8 (85-167)||(33636685-33636767)
chr8 (91-217)||(39691121-39691247)
chr8 (113-226)||(7044329-7044442)
chr8 (88-188)||(24103087-24103187)
chr8 (88-180)||(39932721-39932813)
chr8 (88-226)||(10335020-10335159)
chr8 (113-151)||(36819755-36819793)
chr8 (88-163)||(37564393-37564468)
chr8 (89-151)||(2124141-2124203)
chr8 (88-148)||(5968377-5968437)
chr8 (88-200)||(22209376-22209488)
[»] chr6 (13 HSPs)
chr6 (113-234)||(12383008-12383129)
chr6 (113-226)||(16442075-16442188)
chr6 (116-211)||(8176324-8176419)
chr6 (114-197)||(12307821-12307904)
chr6 (88-217)||(31702747-31702874)
chr6 (91-199)||(7465451-7465558)
chr6 (157-232)||(22695473-22695549)
chr6 (89-160)||(22696000-22696071)
chr6 (117-215)||(35241410-35241509)
chr6 (113-226)||(6048268-6048381)
chr6 (363-415)||(32045160-32045211)
chr6 (116-197)||(26311807-26311889)
chr6 (88-189)||(30509286-30509387)
[»] scaffold0246 (1 HSPs)
scaffold0246 (88-189)||(18144-18245)


Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 14 - 536
Target Start/End: Complemental strand, 31745616 - 31745095
Alignment:
Q  14 atcaataaaacatgtcataacaaaaatatttaattatgacaagaacagtgttgagttaatnnnnnnngttaattgtcttgttaaccagtgcctccgagac 113  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||||||| |    
T  31745616 atcaataaaacatgtcataacataaatatttaattatgacaagaacagtgttgagttaataaaaaa-gttaattgtcttgttaactagtgcctccgaggc 31745518  T
Q  114 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31745517 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttttatgataagttactat 31745418  T
Q  214 ttaaaggccttaactagtgcctagtgccttggtaatcagcaagaaaagtatatggacgaaaatggtgcttaaaaatatgttcaaagtttacaattaccat 313  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31745417 ttaaaggccttaactagtgcctagtgcctcggtaatcagcaagaaaagtatatggaccaaaatggtgcttaaaaatatgttcaaagtttacaattaccat 31745318  T
Q  314 ttttagtattttttaataaattattgaatctcattctcttactataaaatactccctccgatcctttttataaaaagacatttaaatcaacaaaagttaa 413  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||| |    
T  31745317 ttttagtattttttaataaattattgaatcttattctcttactataaaatactccatccggtcctttttataaaaagacatttaaatcaataaaagttga 31745218  T
Q  414 tgaatctagttaaataattggactagatccattaacgtttgttaacctaaatatttattttaaataggactagagagagtctattattttggtaattggt 513  Q
    || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31745217 tgtatctagttaaataattggaccagatccattaacgtttgttaacctaaatatttattttaaataggactagagagagtatattattttggtaattggt 31745118  T
Q  514 atagactcttttttgatgtccat 536  Q
    |||||||||||||||| ||||||    
T  31745117 atagactcttttttgaggtccat 31745095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 88 - 234
Target Start/End: Original strand, 40377012 - 40377158
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| |||||| |   | |||||||||| ||||| ||||||| |||| ||||||||| |||||||||||||| ||||| | || |||||||||    
T  40377012 gtcttgttaacgagtgccccttgggcactctttaaggattccaaaagaagaaataattttataaaaaagtcaaatattttgattcccaattcattgatta 40377111  T
Q  188 cacatattttcatgataagttactatttaaaggccttaactagtgcc 234  Q
    ||||  |||||||||||| |||| |||||||||||||||||||||||    
T  40377112 cacaacttttcatgataaattaccatttaaaggccttaactagtgcc 40377158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 88 - 235
Target Start/End: Original strand, 7549813 - 7549960
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| |||| |  || ||||||||||||  |||  ||||||| |||| ||||||||| |||||||||||||||||||   ||||||||||| |    
T  7549813 gtcttgttaacgagtgtcctcgggacactctttaagaatttcaaaagaagaaataattttataaaaaagtcaaatatttcgatttctgatgcattgatca 7549912  T
Q  188 cacatattttcatgataagttactatttaaaggccttaactagtgcct 235  Q
    ||||  ||||||||||||||||| |||||||||||||| |||||||||    
T  7549913 cacaacttttcatgataagttacaatttaaaggccttagctagtgcct 7549960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 113 - 226
Target Start/End: Original strand, 36393479 - 36393592
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 212  Q
    |||||||||| ||||  ||||||| ||||||| |||||| ||| |||||||||| |||| |||||||||||||||||| ||||||||||||||||||| |    
T  36393479 cactctttaaggatttcaaaagaaaaaattatgttataaaaaaatcaaatattttgattttcgatgcattgattacacgtattttcatgataagttacca 36393578  T
Q  213 tttaaaggccttaa 226  Q
    |||||||| |||||    
T  36393579 tttaaaggtcttaa 36393592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 50974685 - 50974564
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 212  Q
    ||||||| || ||||  ||||||| |||||||||||||| ||||||||||||||| ||| |||||||||| |||||| ||||||||||||||| |||| |    
T  50974685 cactcttgaaggatttcaaaagaaaaaattattttataaaaaagtcaaatatttcaattttcgatgcattaattacatatattttcatgataaattacca 50974586  T
Q  213 tttaaaggccttaactagtgcc 234  Q
    |||||||| |||||| ||||||    
T  50974585 tttaaaggtcttaacgagtgcc 50974564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 88 - 220
Target Start/End: Original strand, 45584509 - 45584641
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| | |||| ||| | |||||||||| ||||| ||||||| |||||||||||||| ||||| ||||||||  |||   |||| ||||||||    
T  45584509 gtcttgttaacgaatgcccccggggcactctttaaggattccaaaagaagaaattattttataaaaaagttaaatattttaatttctgatgtattgatta 45584608  T
Q  188 cacatattttcatgataagttactatttaaagg 220  Q
    |||||||||||||||||||||||| ||||||||    
T  45584609 cacatattttcatgataagttactttttaaagg 45584641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 88 - 234
Target Start/End: Original strand, 31652593 - 31652738
Alignment:
Q  88 gtcttgttaaccagtgcctccg-agacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatt 186  Q
    ||||||||||| |||| ||||| ||| ||||||||| ||||  |||| || |||||||||||||| ||||||||||||||  |||  ||||||| |||||    
T  31652593 gtcttgttaacgagtgtctccggaga-actctttaaggatttcaaaa-aagaaattattttataaaaaagtcaaatattttaatttccgatgcaatgatt 31652690  T
Q  187 acacatattttcatgataagttactatttaaaggccttaactagtgcc 234  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||||||    
T  31652691 acacatattttcatgataggttaccatttaaagcccttaactagtgcc 31652738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 88 - 235
Target Start/End: Original strand, 44719151 - 44719298
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| |||| | ||| |||||| ||||| ||||| |||| |||| |||||||||||| ||||| ||||||| |||||   |||||| ||||||    
T  44719151 gtcttgttaacgagtgtccccgggacactttttaaggattccaaaaaaatatattattttataaaaaagttaaatattccgatttctgatgcaatgatta 44719250  T
Q  188 cacatattttcatgataagttactatttaaaggccttaactagtgcct 235  Q
    |||| ||||||||||||| |||| ||||||||  ||||||||||||||    
T  44719251 cacacattttcatgataaattaccatttaaagctcttaactagtgcct 44719298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 113 - 205
Target Start/End: Complemental strand, 4039713 - 4039621
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataa 205  Q
    |||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||  | |||||||||||||| ||||||| |||||||    
T  4039713 cactctttaaggattccaaaagaataaattattttataaaaaagtcaaatatttcgatttccaatgcattgattacatatatttttatgataa 4039621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 5851530 - 5851649
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 212  Q
    |||||||||| ||||  ||||||| |||| ||||||||| ||| ||||| ||||||||| ||||||||||||||||| |||  ||||||||||||||| |    
T  5851530 cactctttaaggatttcaaaagaagaaataattttataaaaaaatcaaagatttcgattttcgatgcattgattacaaata--ttcatgataagttacca 5851627  T
Q  213 tttaaaggccttaactagtgcc 234  Q
    ||||||||| ||| ||||||||    
T  5851628 tttaaaggctttatctagtgcc 5851649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 25302066 - 25302172
Alignment:
Q  112 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttact 211  Q
    ||||||||||| ||||| |||| || |||| ||| ||||| ||||||||| ||||||||| || || ||||||||||||||||||||||||||||||||     
T  25302066 acactctttaaggattccaaaacaaaaaataattgtataaaaaagtcaaagatttcgattttcaatacattgattacacatattttcatgataagttacc 25302165  T
Q  212 atttaaa 218  Q
    |||||||    
T  25302166 atttaaa 25302172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 88 - 189
Target Start/End: Original strand, 25095579 - 25095680
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||| | |||| ||||  |||||||||||| ||||||||||||| ||||||||| |||| ||||||||||||||| ||| |||||||||||||||    
T  25095579 gtcttgttagcgagtgtctccatgacactctttaaggattctaaaagaagaaattatttcataaaaaagtcaaatatttcaattttcgatgcattgatta 25095678  T
Q  188 ca 189  Q
    ||    
T  25095679 ca 25095680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 91 - 226
Target Start/End: Complemental strand, 34596250 - 34596118
Alignment:
Q  91 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 190  Q
    ||||||||  ||||||||| |||| || |||| ||||||||||||| ||||||||||||||  || ||||||||||||||| || |||||||||||||||    
T  34596250 ttgttaacgggtgcctccg-gacattcattaaggattctaaaagaagaaattattttataa--aattcaaatatttcgattttcaatgcattgattacac 34596154  T
Q  191 atattttcatgataagttactatttaaaggccttaa 226  Q
    ||| |||||| | ||||||  ||||||||| |||||    
T  34596153 ataatttcataaaaagttatcatttaaaggtcttaa 34596118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 45753443 - 45753531
Alignment:
Q  111 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 199  Q
    |||||||||||||||||||||||||| ||||||||| | || || |||||||||||| ||| || |||||||||||||||| |||||||    
T  45753443 gacactctttaaagattctaaaagaagaaattatttcagaaaaatgtcaaatatttcaattttcaatgcattgattacacaaattttca 45753531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 140 - 234
Target Start/End: Complemental strand, 12148383 - 12148289
Alignment:
Q  140 attattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcc 234  Q
    |||||||||| | ||||| |||||||| ||||  | |||||||| |||||||||||||||||||||||||| |||||||| | ||||||||||||    
T  12148383 attattttatgaaaaagtaaaatattttgatttccaatgcattggttacacatattttcatgataagttaccatttaaagactttaactagtgcc 12148289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 34445639 - 34445748
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| |||||| |||   |||||||||| ||||| ||||||| |||||| ||||||| |||||||||||||||||||  | ||||||||||||    
T  34445639 gtcttgttaacgagtgcccccggagcactctttaaggattccaaaagaagaaattaatttataaaaaagtcaaatatttcgatttccaatgcattgatta 34445738  T
Q  188 cacatatttt 197  Q
     |||| ||||    
T  34445739 gacatgtttt 34445748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 12636414 - 12636305
Alignment:
Q  118 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat-gataagttactattta 216  Q
    ||||| ||||| |||||||||||| ||||||| | |||||||| ||||||||||  | || ||||||||||||||||||||||  | || ||||||||||    
T  12636414 tttaaggattccaaaagaataaataattttattaaaaagtcaagtatttcgatttcctatacattgattacacatattttcataaaaaaattactattta 12636315  T
Q  217 aaggccttaa 226  Q
    |||| |||||    
T  12636314 aaggtcttaa 12636305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 113 - 226
Target Start/End: Complemental strand, 40203189 - 40203076
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 212  Q
    |||||||||| ||||  |||| || ||||||||| |||| ||||||||||||||| |||  | ||||||||||||||||||||||||    ||||||| |    
T  40203189 cactctttaaggattacaaaacaagaaattatttcataaaaaagtcaaatatttcaatttccaatgcattgattacacatattttcagacaaagttacca 40203090  T
Q  213 tttaaaggccttaa 226  Q
    ||||||| ||||||    
T  40203089 tttaaagaccttaa 40203076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 5115717 - 5115634
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattt 196  Q
    |||||||||| ||||||||||||||||||||| |||||| ||||| ||||||||| |||  | ||||||| |||||||| ||||    
T  5115717 cactctttaaggattctaaaagaataaattatgttataaaaaagttaaatatttcaatttccaatgcattaattacacaaattt 5115634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 28672420 - 28672315
Alignment:
Q  91 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 190  Q
    |||||||  ||||| |||||||||||||| ||  ||||||||| ||  ||||||||| ||| |||||||||||||| |||| |  |||||||||||||||    
T  28672420 ttgttaatgagtgcatccgagacactctt-aagcattctaaaataaacaattattttttaaaaaagtcaaatattttgattttaaatgcattgattacac 28672322  T
Q  191 atatttt 197  Q
    |||||||    
T  28672321 atatttt 28672315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 232
Target Start/End: Complemental strand, 5787554 - 5787434
Alignment:
Q  111 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttac 210  Q
    |||||||||||| ||||| ||||||| ||| |||||||||| | ||| ||||||||| |||  | ||||||| ||||||||||||||  ||||||||||     
T  5787554 gacactctttaaggattc-aaaagaagaaaatattttataaaatagttaaatatttcaatttccaatgcattaattacacatatttttttgataagttat 5787456  T
Q  211 tatttaaaggccttaactagtg 232  Q
      ||||||| | ||||||||||    
T  5787455 attttaaagactttaactagtg 5787434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 42850176 - 42850094
Alignment:
Q  145 tttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaac 227  Q
    ||||||| ||||| ||||||||||||| |||||||||| |||| | ||||||| ||||||| |||  ||||||||| ||||||    
T  42850176 tttataaaaaagttaaatatttcgattttcgatgcattaattatatatatttttatgataaattatcatttaaaggtcttaac 42850094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 50222688 - 50222611
Alignment:
Q  143 attttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaagg 220  Q
    ||||||||| ||| ||||||||||  ||| || ||||||||||||||| ||||||||| | || ||||||||||||||    
T  50222688 attttataaaaaaatcaaatattttaattttcaatgcattgattacacttattttcataaaaaattactatttaaagg 50222611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 33744246 - 33744159
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 200  Q
    ||||||||||  ||| ||||| ||  ||||||||| | | ||||||||||||||||||| || |||||||||||||| || |||||||    
T  33744246 cactctttaagcattttaaaataagtaattatttttttaaaaagtcaaatatttcgattttcaatgcattgattacatattttttcat 33744159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 48947225 - 48947320
Alignment:
Q  139 aattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcc 234  Q
    ||||||||| ||| || ||||||  |||| |||  | ||||| |||||||||| |||||||| | ||||||| |||||||| ||||||||||||||    
T  48947225 aattattttttaaaaatgtcaaagttttcaatttccaatgcactgattacacaaattttcataaaaagttaccatttaaagtccttaactagtgcc 48947320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 229
Target Start/End: Complemental strand, 13954271 - 13954126
Alignment:
Q  88 gtcttgttaaccagtgcctccgag-----acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcatt 182  Q
    |||||||||||  |||||||||||     ||||||||||| ||||||| ||||| |||||| ||||||| ||| ||||| |||| ||||  | ||||| |    
T  13954271 gtcttgttaacgggtgcctccgaggtggaacactctttaaggattctagaagaagaaattactttataaaaaaatcaaaaattttgatttccaatgca-t 13954173  T
Q  183 gattacacatattttcatgataagttactatttaaaggccttaacta 229  Q
    ||||||| | |||||||  |||| ||   ||||||||||||||||||    
T  13954172 gattacatacattttcacaataaattttcatttaaaggccttaacta 13954126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 39241512 - 39241430
Alignment:
Q  118 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 200  Q
    ||||| |||| ||||| ||||| ||||||||||| |||   ||||||||  ||| |||||||||||||||||||| |||||||    
T  39241512 tttaaggattttaaaaaaataatttattttataaaaaaaataaatattttaattttcgatgcattgattacacatgttttcat 39241430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 48253319 - 48253375
Alignment:
Q  144 ttttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 200  Q
    |||||||| |||||||| |||||||||| || || ||||||||| ||||||||||||    
T  48253319 ttttataaaaaagtcaactatttcgattttcaatacattgattatacatattttcat 48253375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 217
Target Start/End: Original strand, 44442270 - 44442349
Alignment:
Q  138 aaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaa 217  Q
    |||||||| | ||| ||||||||||||||| ||| || || |||| | |||||||||||| || | ||||||||||||||    
T  44442270 aaattattctttaaaaaagtcaaatatttcaattttcaatacattaaatacacatatttttataaaaagttactatttaa 44442349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 199
Target Start/End: Complemental strand, 3338137 - 3338051
Alignment:
Q  114 actctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgattacacatattttca 199  Q
    |||||||||| |||||||||||| ||||||||| || || ||| | || |||||| ||| || |||||||||||||| | |||||||    
T  3338137 actctttaaacattctaaaagaagaaattatttcataaaaaaaattaagtatttcaattttcaatgcattgattacataaattttca 3338051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 5597710 - 5597764
Alignment:
Q  112 acactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 166  Q
    |||||||||||| ||| |||||||| |||||||| ||||| ||||| ||||||||    
T  5597710 acactctttaaatattttaaaagaagaaattattctataaaaaagttaaatattt 5597764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 27396102 - 27396164
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttata 150  Q
    ||||||||||| ||| || |||||||| |||||||  ||||||||| || |||||||||||||    
T  27396102 gtcttgttaacaagtaccaccgagacattctttaagaattctaaaataagaaattattttata 27396164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 50328405 - 50328308
Alignment:
Q  135 aataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgc 233  Q
    ||||||||||||||||| ||| | |||||||| |||| | ||| | || |||| ||||||||| |||||||||||  ||||||| | ||||| ||||||    
T  50328405 aataaattattttataaaaaatt-aaatattttgatttttgatactttaattatacatatttttatgataagttatcatttaaaagtcttaattagtgc 50328308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 200
Target Start/End: Original strand, 14774091 - 14774184
Alignment:
Q  107 ccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 200  Q
    |||||| | |||||||  ||||||||| ||| ||||||||  | | ||| ||||||||||||||| || ||||||||| || ||| ||||||||    
T  14774091 ccgagatattctttaagcattctaaaataatcaattatttgtttaaaaaatcaaatatttcgattttcaatgcattgaatatacacattttcat 14774184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 28171590 - 28171517
Alignment:
Q  116 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 189  Q
    |||||||  |||| ||||||| |||||||||||||| ||||| ||||||||| ||| |  ||||||| ||||||    
T  28171590 tctttaagcattcaaaaagaaaaaattattttataaaaaagttaaatatttcaatttttaatgcattcattaca 28171517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 15549642 - 15549686
Alignment:
Q  153 aaagtcaaatatttcgattctcgatgcattgattacacatatttt 197  Q
    ||||| ||||||||||||| || |||||||||||||||| |||||    
T  15549642 aaagtaaaatatttcgattttcaatgcattgattacacacatttt 15549686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 88 - 234
Target Start/End: Complemental strand, 49446730 - 49446583
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgatt 186  Q
    ||||||||||| ||||||  || | |||||||||| ||||| ||||||| || ||||||||||| ||| ||||||||||||||||  |||||||||||||    
T  49446730 gtcttgttaacaagtgccctcggggcactctttaaggattccaaaagaagaagttattttataaaaaaagtcaaatatttcgatttccgatgcattgatt 49446631  T
Q  187 acacatattttcatgataagttactatttaaaggccttaactagtgcc 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49446630 acacatattttcatgataagttactatttaaaggccttaactagtgcc 49446583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 88 - 227
Target Start/End: Complemental strand, 44646661 - 44646522
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| |||||| ||| | || ||||||| ||||  ||||||| ||| ||||||||||||||||||||||||||||||  ||||||||||||||    
T  44646661 gtcttgttaacgagtgcccccggggcattctttaaggatttcaaaagaagaaactattttataataaagtcaaatatttcgatttccgatgcattgatta 44646562  T
Q  188 cacatattttcatgataagttactatttaaaggccttaac 227  Q
    ||||||||||||||||||||||||||| ||| ||||||||    
T  44646561 cacatattttcatgataagttactattcaaaagccttaac 44646522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 113 - 226
Target Start/End: Complemental strand, 44647992 - 44647879
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 212  Q
    |||||||||||||||| ||||||| ||| |||||||||||||| ||||||||||| |||  ||||||||| |||||||||||||||||||||||||||||    
T  44647992 cactctttaaagattccaaaagaagaaactattttataataaaatcaaatatttcaatttccgatgcattaattacacatattttcatgataagttacta 44647893  T
Q  213 tttaaaggccttaa 226  Q
    || |||||||||||    
T  44647892 ttcaaaggccttaa 44647879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 89 - 233
Target Start/End: Original strand, 42197007 - 42197150
Alignment:
Q  89 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattac 188  Q
    |||||||||| ||||||| ||  |||||||||||| |||||||||||| |||||||||||| | ||| |||||||||| |||| ||||| ||||||||||    
T  42197007 tcttgttaacgagtgccttcggaacactctttaaa-attctaaaagaagaaattattttattaaaaaatcaaatattttgattttcgatacattgattac 42197105  T
Q  189 acatattttcatgataagttactatttaaaggccttaactagtgc 233  Q
    ||||||||| ||||||| |||| |||||||| | |||||||||||    
T  42197106 acatatttttatgataaattaccatttaaagactttaactagtgc 42197150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 88 - 209
Target Start/End: Complemental strand, 6316942 - 6316821
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| |||||||||| | |||||||||||||||  ||||||| |||| ||||||||| |||| |||| |||| |||| || ||||||||||||    
T  6316942 gtcttgttaacgagtgcctccggggcactctttaaagatttcaaaagaagaaataattttataaaaaaggcaaagattttgattttcaatgcattgatta 6316843  T
Q  188 cacatattttcatgataagtta 209  Q
    ||||||||||||||||||||||    
T  6316842 cacatattttcatgataagtta 6316821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 107 - 219
Target Start/End: Complemental strand, 9802732 - 9802621
Alignment:
Q  107 ccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataag 206  Q
    ||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| ||||  |||| ||||||||||||||||||| ||||||||    
T  9802732 ccgagacactctttaaa-attctaaaagaaaaaattattttataaaaaagtcaaatattttgatttccgatacattgattacacatatttttatgataag 9802634  T
Q  207 ttactatttaaag 219  Q
    ||| | |||||||    
T  9802633 ttattctttaaag 9802621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 20390023 - 20390138
Alignment:
Q  116 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 215  Q
    |||||||  |||| |||| || |||| ||||||||| |||||||||||||| |||| ||||||||||||| |||||  ||||||||||||||||| ||||    
T  20390023 tctttaagaattccaaaacaagaaataattttataaaaaagtcaaatattttgattttcgatgcattgatcacacaacttttcatgataagttaccattt 20390122  T
Q  216 aaaggccttaactagt 231  Q
    ||| ||||||||||||    
T  20390123 aaaagccttaactagt 20390138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 42844030 - 42844145
Alignment:
Q  105 ctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgata 204  Q
    ||||| ||||||||| |||||||  |||| |  |||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| |||    
T  42844030 ctccgggacactcttgaaagatttcaaaaaacgaaattattttataaaaaaatcaaatatttcgattttcgatgcattgattacacatattttcataata 42844129  T
Q  205 agttactatttaaagg 220  Q
    | ||||  ||||||||    
T  42844130 aattaccctttaaagg 42844145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 114 - 234
Target Start/End: Original strand, 41468080 - 41468200
Alignment:
Q  114 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 213  Q
    |||||||||  |||| ||||||| ||||||| |||||| ||||| ||||||| |||||   |||||||||||||||  |||||| |||| ||||||| ||    
T  41468080 actctttaagaattccaaaagaagaaattatgttataaaaaagttaaatattccgatttctgatgcattgattacatgtatttttatgaaaagttaccat 41468179  T
Q  214 ttaaaggccttaactagtgcc 234  Q
    |||||||||||||||||||||    
T  41468180 ttaaaggccttaactagtgcc 41468200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 33982423 - 33982517
Alignment:
Q  116 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttac 210  Q
    ||||||| ||||  ||||||| |||||||||||||| ||||| |||||||||||||  |||| ||||||||||| ||||||||||||||||||||    
T  33982423 tctttaaggatttcaaaagaaaaaattattttataaaaaagttaaatatttcgatttccgatacattgattacatatattttcatgataagttac 33982517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 44088286 - 44088376
Alignment:
Q  138 aaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaact 228  Q
    |||||||||||| | ||| |||||||||| |||| | | |||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  44088286 aaattattttattaaaaaatcaaatattttgatttttggtgcattgattacacatatcttcatgataagttactatttaaagtccttaact 44088376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 25196110 - 25196218
Alignment:
Q  92 tgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacaca 191  Q
    ||||||| ||||||||||| ||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||| ||||  | |  |||| ||||||||    
T  25196110 tgttaacgagtgcctccgaaacactctttaaggattctaaaagaaaaaattaatttataaaaaagtcaaatattttgatttccaagacattaattacaca 25196209  T
Q  192 tattttcat 200  Q
    | |||||||    
T  25196210 tgttttcat 25196218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 50115059 - 50115149
Alignment:
Q  130 aaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggcct 223  Q
    ||||||| |||||||||||||| ||||||||| |||||||||  | ||||||||||||||||||||   |||||||||||| ||||||||||||    
T  50115059 aaaagaagaaattattttataaaaaagtcaaagatttcgatttcctatgcattgattacacatatt---atgataagttaccatttaaaggcct 50115149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 189
Target Start/End: Complemental strand, 40480306 - 40480205
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||| ||| |||||||| | |||||||||||| ||| ||||||||| ||||||| | |||| ||||||||||||||| |||| |||| |||||||||    
T  40480306 gtcttgtaaacgagtgcctctgggacactctttaaggatgctaaaagaagaaattatgtcataaaaaagtcaaatatttcaattcccgatacattgatta 40480207  T
Q  188 ca 189  Q
    ||    
T  40480206 ca 40480205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 12103951 - 12103864
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 200  Q
    |||| ||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||  | |  ||||||||||||||||||||||    
T  12103951 cactttttaaggattctaaaagaataaattatttcataaaaaagtcaaataattcgatttccaaaacattgattacacatattttcat 12103864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 113 - 226
Target Start/End: Complemental strand, 24395308 - 24395194
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatg-cattgattacacatattttcatgataagttac 210  Q
    |||||||||| ||||||||||||| |||||| ||||||| ||| |||||||||||||||| || | | ||||||||||||||||||||||   |||||||    
T  24395308 cactctttaaggattctaaaagaagaaattaatttataaaaaaggtcaaatatttcgatt-tctaagacattgattacacatattttcatacaaagttac 24395210  T
Q  211 tatttaaaggccttaa 226  Q
    ||| |||||| |||||    
T  24395209 tatataaaggtcttaa 24395194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 49144774 - 49144864
Alignment:
Q  129 taaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaag 219  Q
    |||||||| |||||||||||||| ||||| ||| |||| |||| ||||||||||||||||| ||||||| |||| || |||| ||||||||    
T  49144774 taaaagaagaaattattttataaaaaagttaaaaattttgattttcgatgcattgattacatatatttttatgaaaaattaccatttaaag 49144864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 153 - 234
Target Start/End: Complemental strand, 38494829 - 38494748
Alignment:
Q  153 aaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcc 234  Q
    |||| ||||| |||||||| ||||||||||||||||||||||||| ||||||| |||  || ||||| ||||||||||||||    
T  38494829 aaaggcaaatctttcgattttcgatgcattgattacacatatttttatgataaattatcatataaagaccttaactagtgcc 38494748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 28165362 - 28165442
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttc 167  Q
    ||||||||||| |||||| | |||| ||||||||||||||||||||||| |||||||||||| || ||| |||||||||||    
T  28165362 gtcttgttaacgagtgcccctgagatactctttaaagattctaaaagaagaaattattttataaaaaaaatcaaatatttc 28165442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 39727660 - 39727579
Alignment:
Q  117 ctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 199  Q
    |||||| |||||||||||||||||||||| ||||| ||||||||||||||| |||   ||||||||||||||| | |||||||    
T  39727660 ctttaaggattctaaaagaataaattattctataa-aaagtcaaatatttcaatttctgatgcattgattacataaattttca 39727579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 50086543 - 50086432
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| |||||| ||| || |||||||||| |||| |||| ||  ||||||| | ||| ||| |||||||||| |||| || ||||||||| ||    
T  50086543 gtcttgttaacgagtgcc-ccgggaaactctttaaacattccaaaataaacaattattctttaaaaaaatcaaatattttgattttcaatgcattgaata 50086445  T
Q  188 cacatattttcat 200  Q
    |||||||||||||    
T  50086444 cacatattttcat 50086432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 34235910 - 34235984
Alignment:
Q  116 tctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgattaca 189  Q
    |||||||| ||| ||||||||||||||||||||| || ||||||||| ||||| ||| || ||||||||||||||    
T  34235910 tctttaaacattttaaaagaataaattattttataaaaaaagtcaaaaatttcaattttcaatgcattgattaca 34235984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 36721657 - 36721591
Alignment:
Q  153 aaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaag 219  Q
    ||||||||||||||| |||||| |||||||||||||||| |||| ||| | || |||||||||||||    
T  36721657 aaagtcaaatatttcaattctcaatgcattgattacacaaatttccataaaaacttactatttaaag 36721591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 231
Target Start/End: Complemental strand, 49769219 - 49769110
Alignment:
Q  122 aagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggc 221  Q
    |||||| |||||||| |||| ||||||||| |||||  || ||||  |||   || | |||||||||||||||||| |||||||||||| |||||||||     
T  49769219 aagattttaaaagaagaaataattttataaaaaagttgaaaattttaatttatgacgaattgattacacatatttttatgataagttaccatttaaaggt 49769120  T
Q  222 cttaactagt 231  Q
    ||||| ||||    
T  49769119 cttaagtagt 49769110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 31871149 - 31871090
Alignment:
Q  130 aaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 189  Q
    ||||||| |||||||||||||| ||||| ||||||||| |||  ||||||||||||||||    
T  31871149 aaaagaagaaattattttataaaaaagtaaaatatttcaatttccgatgcattgattaca 31871090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 218
Target Start/End: Complemental strand, 52373181 - 52373050
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgatt 186  Q
    ||||||||||| ||| |||||| |||||||||||| |||| | ||| || ||||||||| || || |||||||||||||   ||| || ||||||  |||    
T  52373181 gtcttgttaacgagtacctccgggacactctttaaggattttgaaataagaaattatttcataaaaaaagtcaaatattataattttcaatgcataaatt 52373082  T
Q  187 acacatattttcatgataagttactatttaaa 218  Q
    ||||| |||||||  | || ||||||||||||    
T  52373081 acacaaattttcagaaaaaattactatttaaa 52373050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 235
Target Start/End: Complemental strand, 41370239 - 41370157
Alignment:
Q  153 aaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcct 235  Q
    ||||| ||||||||| ||| || |||||||||||||||| |||||||| | || |||||||| |||| ||||||  |||||||    
T  41370239 aaagttaaatatttcaattttcaatgcattgattacacaaattttcataaaaacttactattcaaagtccttaaaaagtgcct 41370157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 1696283 - 1696194
Alignment:
Q  129 taaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaa 218  Q
    |||||||| | ||||||  |||| |||| |||||||||| |||  |||||||||||||||| | |||||||  | |||||||||||||||    
T  1696283 taaaagaagatattattccataaaaaagacaaatatttcaatttccgatgcattgattacatacattttcaaaaaaagttactatttaaa 1696194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 53919863 - 53919936
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatt 186  Q
    ||||||||||  |||  |||||||||||||||| ||||| ||||||||| ||||| |||  |||||||||||||    
T  53919863 cactctttaagcatttcaaaagaataaattattctataaaaaagtcaaaaatttcaatttccgatgcattgatt 53919936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 205
Target Start/End: Original strand, 27346293 - 27346385
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataa 205  Q
    |||||||||| |||||||||| || || ||||||||||| ||||||||| |||| ||||   | |||||| |||| ||| ||||| |||||||    
T  27346293 cactctttaaggattctaaaaaaagaatttattttataaaaaagtcaaagattttgatttctggtgcatttattatacacatttttatgataa 27346385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 5388022 - 5387947
Alignment:
Q  111 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatt 186  Q
    |||||| | |||||||| |||||||| |||||||||||  | ||| | ||||||||||||| || |||||||||||    
T  5388022 gacactttataaagattttaaaagaagaaattattttaataaaaaattaaatatttcgattttcaatgcattgatt 5387947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 216
Target Start/End: Original strand, 51105918 - 51106020
Alignment:
Q  114 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 213  Q
    |||||||||| ||||||||| ||  ||||||| | ||| ||||||||||||||  ||| || || ||  |||||| ||||||||||| |  |||||||||    
T  51105918 actctttaaatattctaaaataaacaattattatttaaaaaagtcaaatattttaattttcaatacacggattacgcatattttcataaatagttactat 51106017  T
Q  214 tta 216  Q
    |||    
T  51106018 tta 51106020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 27707003 - 27706954
Alignment:
Q  118 tttaaagattctaaaagaataaattattttataataaagtcaaatatttc 167  Q
    ||||| |||||||||| || |||| ||||||||| |||||||||||||||    
T  27707003 tttaatgattctaaaataagaaatcattttataagaaagtcaaatatttc 27706954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 27981368 - 27981477
Alignment:
Q  111 gacactctttaaagattct-aaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagtta 209  Q
    ||||||||||||| ||| | |||| || |||||| ||||| | ||| | ||||||||| ||| || || |||| ||||||||||||| |||   ||||||    
T  27981368 gacactctttaaaaatttttaaaaaaaaaaattaatttatgaaaaaattaaatatttcaattttcaatacattaattacacatatttacatacaaagtta 27981467  T
Q  210 ctatttaaag 219  Q
    ||||||||||    
T  27981468 ctatttaaag 27981477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 44088211 - 44088272
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat 149  Q
    ||||||||||| ||||||||||   || | |||||| |||||||||||| ||||||||||||    
T  44088211 gtcttgttaacgagtgcctccggagcaatttttaaaaattctaaaagaagaaattattttat 44088272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 217
Target Start/End: Complemental strand, 52650826 - 52650697
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| ||||||||||  |||||||||||| || |||||  || |||||||| | ||  || ||||||  |||| ||| || || || ||||||    
T  52650826 gtcttgttaacgagtgcctccggaacactctttaaacatgctaaattaagaaattattctttacaaatgtcaaaattttcaattttcaattcactgatta 52650727  T
Q  188 cacatattttcatgataagttactatttaa 217  Q
    ||||  ||||||| | || |||||||||||    
T  52650726 cacaatttttcataaaaaattactatttaa 52650697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 11875539 - 11875452
Alignment:
Q  112 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 200  Q
    ||||||||||||| || ||||| || |||||||||||||  ||| | ||||||||  ||| || |||||||||||| ||| ||||||||    
T  11875539 acactctttaaagcttttaaaaaaagaaattattttatacaaaaattaaatattt-aattttcaatgcattgattatacacattttcat 11875452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 23230372 - 23230272
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgatt 186  Q
    ||||| ||||| |||| ||||||||||||||||||  |||| ||||| | ||||||||  || || ||||| |||| |||| ||| || |||||||||||    
T  23230372 gtcttattaacgagtgtctccgagacactctttaagcattccaaaaggagaaattattccatgaaaaaagttaaatgtttcaattttcaatgcattgatt 23230273  T
Q  187 a 187  Q
    |    
T  23230272 a 23230272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 47560596 - 47560707
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| |||| || |||||||||||||||  |||| |||| ||  ||||||||| ||| ||| |||||| ||| |||| |  || |||||||||    
T  47560596 gtcttgttaacgagtgtcttcgagacactctttaatcattccaaaataagcaattatttt-taaaaaaatcaaatgttttgatttttaatacattgatta 47560694  T
Q  188 cacatattttcat 200  Q
    |||  ||||||||    
T  47560695 cacgcattttcat 47560707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 88 - 234
Target Start/End: Original strand, 34758899 - 34759045
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| |||||||||| | |||||||||| ||||| |||||||  ||||||||||||| ||||| ||||||||||| ||  |||||||||||||    
T  34758899 gtcttgttaacgagtgcctccggggcactctttaaggattcaaaaagaagtaattattttataaaaaagtgaaatatttcgactcctgatgcattgatta 34758998  T
Q  188 cacatattttcatgataagttactatttaaaggccttaactagtgcc 234  Q
    || |||||| |||||||||||||||||||||| ||||||||||||||    
T  34758999 catatatttccatgataagttactatttaaagcccttaactagtgcc 34759045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 89 - 234
Target Start/End: Complemental strand, 54912133 - 54911988
Alignment:
Q  89 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattac 188  Q
    |||||||||| |||| | ||||  ||||||||||  |||| ||||||||||| |||||||||| ||||| ||||||||| |||   ||||||||||||||    
T  54912133 tcttgttaacgagtgtccccgaagcactctttaagaattccaaaagaataaactattttataacaaagttaaatatttcaatttcggatgcattgattac 54912034  T
Q  189 acatattttcatgataagttactatttaaaggccttaactagtgcc 234  Q
    ||||||||||||||||||||   ||||| |||||||||||||||||    
T  54912033 acatattttcatgataagttgtcatttataggccttaactagtgcc 54911988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 18399271 - 18399149
Alignment:
Q  113 cactctttaaagattctaaaagaataaattatttt-ataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttact 211  Q
    |||||||||| ||||| ||||||| |||| ||||| |||| |||||||||||||||||||  ||||||||||||||||||  |||||||||||||||||     
T  18399271 cactctttaaggattccaaaagaagaaataatttttataaaaaagtcaaatatttcgatttccgatgcattgattacacaacttttcatgataagttacc 18399172  T
Q  212 atttaaaggccttaactagtgcc 234  Q
    ||||||| |||||||||| ||||    
T  18399171 atttaaaagccttaactaatgcc 18399149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 89 - 226
Target Start/End: Complemental strand, 30687214 - 30687077
Alignment:
Q  89 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattac 188  Q
    |||||||||| |||| ||| |||| ||||||||| ||||||||||||| ||||||| |||||| ||| ||||| | || |||| | ||||||||||||||    
T  30687214 tcttgttaacgagtgtctcagagatactctttaaggattctaaaagaagaaattatgttataaaaaaatcaaagagtttgatttttgatgcattgattac 30687115  T
Q  189 acatattttcatgataagttactatttaaaggccttaa 226  Q
    ||||||||||||||||| |||  |||||||| ||||||    
T  30687114 acatattttcatgataaattatcatttaaagaccttaa 30687077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 88 - 227
Target Start/End: Original strand, 27968170 - 27968307
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcatt-gatt 186  Q
    ||||||||||| |||||| ||| |||||| ||||| ||||| ||||||| |||| |||| |||| ||||||||| |||| |||| |||||||||| ||||    
T  27968170 gtcttgttaacgagtgcc-ccg-gacactttttaaggattccaaaagaagaaataattt-ataaaaaagtcaaagattttgattttcgatgcatttgatt 27968266  T
Q  187 acacatattttcatgataagttactatttaaaggccttaac 227  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  27968267 acacatattttcatgataagttaccatttaaaggccttaac 27968307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 88 - 227
Target Start/End: Complemental strand, 52340257 - 52340118
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaag-tcaaatatttcgattctcgatgcattgatt 186  Q
    ||||||||||| ||| | |||||| |||||||||| ||||| ||| ||| |||| ||||||||| |||  ||||| |||||||||  |||||||||||||    
T  52340257 gtcttgttaacgagttc-tccgaggcactctttaaggattccaaaggaagaaataattttataaaaaaaatcaaagatttcgatttccgatgcattgatt 52340159  T
Q  187 acacatattttcatgataagttactatttaaaggccttaac 227  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  52340158 acacatatttttatgataagttaccatttaaaggccttaac 52340118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 100 - 218
Target Start/End: Original strand, 38388694 - 38388812
Alignment:
Q  100 agtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 199  Q
    |||||||||| | |||| ||||||||||||||||||| |||||| ||||||| |||||||||||||| |||| ||  ||||||||||||||||||||| |    
T  38388694 agtgcctccggggcactatttaaagattctaaaagaagaaattaatttataaaaaagtcaaatattttgattttcattgcattgattacacatattttta 38388793  T
Q  200 tgataagttactatttaaa 218  Q
    | | || ||||||||||||    
T  38388794 taaaaatttactatttaaa 38388812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 28434481 - 28434591
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| |||||  ||| |||||||||||| |||| ||| |||||||||||||| |||| |||||||||||||| |||| |||||||||||||||    
T  28434481 gtcttgttaacgagtgctcccgggacactctttaaggattttaagagaataaattatttcataa-aaagtcaaatattttgattttcgatgcattgatta 28434579  T
Q  188 cacatattttca 199  Q
    || | |||||||    
T  28434580 cataaattttca 28434591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 88 - 189
Target Start/End: Complemental strand, 779810 - 779710
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| | ||||| |||||||| ||||  | ||||||| ||||    
T  779810 gtcttgttaacgagtgcctcc-agacactctttaaaaattctaaaagaataaattattttatgaaaaagttaaatattttgatttgcaatgcattcatta 779712  T
Q  188 ca 189  Q
    ||    
T  779711 ca 779710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 38705086 - 38704969
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| |||||| ||||   |||||||||  |||| ||||||| |||||||||||||| || ||||||||||| ||||  ||||||||||||||    
T  38705086 gtcttgttaacgagtgcccccgaagtactctttaagaattcaaaaagaaaaaattattttataaaaatgtcaaatattttgatttccgatgcattgatta 38704987  T
Q  188 cacatattttcatgataa 205  Q
    |||||||||  |||||||    
T  38704986 cacatatttgtatgataa 38704969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 7754871 - 7754772
Alignment:
Q  124 gattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggcc 222  Q
    ||||| ||||||| || | ||||||||| ||| |||||  |||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7754871 gattccaaaagaagaagtaattttataaaaaaagtcaacgatttcgatttccgatgcattgattagacatattttcatgataagttactatttaaaggcc 7754772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 113 - 226
Target Start/End: Original strand, 4033026 - 4033138
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 212  Q
    |||| ||||| |||||||||| || |||||||||||||| ||| ||||| |||||||||  ||||||| |||||||||| ||||||||||||| ||   |    
T  4033026 cactttttaaggattctaaaaaaagaaattattttataaaaaaatcaaagatttcgatttccgatgca-tgattacacacattttcatgataaatttaca 4033124  T
Q  213 tttaaaggccttaa 226  Q
    |||||||| |||||    
T  4033125 tttaaaggacttaa 4033138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 19898191 - 19898100
Alignment:
Q  135 aataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaa 226  Q
    ||||||||||||||||  ||| ||||||||||| ||| || ||||||||||||||||||||||||| | || |||| || |||||| |||||    
T  19898191 aataaattattttatataaaaatcaaatatttcaattttcaatgcattgattacacatattttcataaaaatttacaatgtaaaggtcttaa 19898100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 55110042 - 55110109
Alignment:
Q  133 agaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 200  Q
    |||| |||||||||||||| ||| ||||||||||||||| || |||||||||||||| ||||||||||    
T  55110042 agaaaaaattattttataaaaaaatcaaatatttcgattttcaatgcattgattacatatattttcat 55110109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 226
Target Start/End: Complemental strand, 25548333 - 25548196
Alignment:
Q  89 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgatta 187  Q
    |||||||||| ||| || |||| ||||||||||| || |||||||||| ||| |||||||||| ||| || ||||||||| |||    ||||||||||||    
T  25548333 tcttgttaacgagtacccccga-acactctttaaggactctaaaagaagaaaatattttataaaaaaagttaaatatttcaatttctaatgcattgatta 25548235  T
Q  188 cacatattttcatgataagttactatttaaaggccttaa 226  Q
    ||||||||||||| | || |||  ||||||||| |||||    
T  25548234 cacatattttcataaaaatttatcatttaaaggtcttaa 25548196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 43749581 - 43749507
Alignment:
Q  117 ctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacaca 191  Q
    |||||| |||||||||||||||||||||| ||| | ||||||||||||||| ||| || ||  ||||||||||||    
T  43749581 ctttaaggattctaaaagaataaattattctattaaaaagtcaaatatttcaattttctatatattgattacaca 43749507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 53433281 - 53433211
Alignment:
Q  129 taaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 199  Q
    |||||||| |||||||| ||||| ||||||||||||||  ||| ||||||||||||||||| | |||||||    
T  53433281 taaaagaagaaattattctataaaaaagtcaaatattttaattttcgatgcattgattacataaattttca 53433211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 1680566 - 1680511
Alignment:
Q  116 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 171  Q
    ||||||| ||||| |||||||||||||| ||||||| |||||||||||||| ||||    
T  1680566 tctttaaggattcaaaaagaataaattaatttataaaaaagtcaaatattttgatt 1680511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 2831538 - 2831629
Alignment:
Q  109 gagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 200  Q
    |||||||||||||| ||||| |||  || |||||||||| ||||||||||||||||||| ||| |  ||||| |||||| |||  |||||||    
T  2831538 gagacactctttaaggattccaaatcaagaaattattttttaataaagtcaaatatttcaattttaaatgcaatgattatacaagttttcat 2831629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 39976721 - 39976804
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 197  Q
    |||||||| || ||||||||| ||| ||||||||| ||| |||||||||| |||| ||| || || |||||||||||| ||||||    
T  39976721 cactctttgaacattctaaaataatcaattatttt-taaaaaagtcaaatgtttctattttcaatacattgattacacgtatttt 39976804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 54955859 - 54955783
Alignment:
Q  133 agaataaattattttata-ataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagtt 208  Q
    |||||||||||||||||| | ||| |||||||||| |||| | |||||||  |||||| |||||||||||| |||||    
T  54955859 agaataaattattttatagaaaaaatcaaatattttgatttttgatgcataaattacatatattttcatgaaaagtt 54955783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 11404700 - 11404754
Alignment:
Q  112 acactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 166  Q
    ||||||||| ||||||  |||| ||||||||||||||||| ||||| ||||||||    
T  11404700 acactcttttaagattaaaaaaaaataaattattttataaaaaagttaaatattt 11404754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 40546348 - 40546398
Alignment:
Q  139 aattattttataataaagtcaaatatttcgattctcgatgcattgattaca 189  Q
    ||||||||| ||| |||||||||||||||||||  | ||||||||||||||    
T  40546348 aattattttttaaaaaagtcaaatatttcgatttccaatgcattgattaca 40546398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 420
Target Start/End: Original strand, 9213512 - 9213572
Alignment:
Q  359 aaaatactccctccgatcctttttataaaaagacatttaaatcaacaaaagttaatgaatct 420  Q
    ||||||||||||||| |||| ||||| ||||||||||| | |||||||||||| ||| ||||    
T  9213512 aaaatactccctccggtcctatttat-aaaagacattttagtcaacaaaagttgatgtatct 9213572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 29497285 - 29497248
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaaga 125  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  29497285 gtcttgttaacgagtgcctccgagacattctttaaaga 29497248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 29611990 - 29612035
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaa 133  Q
    ||||||||||| |||||| ||| ||||||||||||| |||||||||    
T  29611990 gtcttgttaacgagtgcccccgggacactctttaaacattctaaaa 29612035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 21490682 - 21490626
Alignment:
Q  144 ttttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 200  Q
    |||| ||| ||||||||||||||| ||| || || ||||||| ||||||||||||||    
T  21490682 ttttgtaaaaaagtcaaatatttcaattttcaattcattgatgacacatattttcat 21490626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 30464056 - 30463992
Alignment:
Q  125 attctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 189  Q
    |||| ||||||| |||||||| ||||| ||||||||| ||||| ||| |  ||||||||||||||    
T  30464056 attccaaaagaagaaattattctataaaaaagtcaaacatttcaatttttaatgcattgattaca 30463992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 37775411 - 37775371
Alignment:
Q  131 aaagaataaattattttataataaagtcaaatatttcgatt 171  Q
    |||||| |||||||||||||| ||||| |||||||||||||    
T  37775411 aaagaagaaattattttataaaaaagttaaatatttcgatt 37775371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 88 - 231
Target Start/End: Original strand, 8247037 - 8247180
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| |||||| ||| |||||||||||| ||||| ||||||| |||| ||||||||| |||||||||||||||||||  ||||||||||||||    
T  8247037 gtcttgttaacgagtgcccccgtgacactctttaaggattccaaaagaagaaataattttataaaaaagtcaaatatttcgatttccgatgcattgatta 8247136  T
Q  188 cacatattttcatgataagttactatttaaaggccttaactagt 231  Q
     |||  ||||||||||||||||| |||||||| |||||||||||    
T  8247137 tacaacttttcatgataagttaccatttaaagaccttaactagt 8247180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 88 - 233
Target Start/End: Original strand, 3263717 - 3263862
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| ||||| |||| | ||||||||||  |||  ||||||| |||| ||||||||| ||||||||| |||||||||  ||||||||||||||    
T  3263717 gtcttgttaacgagtgcttccggggcactctttaagaatttcaaaagaagaaatcattttataaaaaagtcaaagatttcgatttccgatgcattgatta 3263816  T
Q  188 cacatattttcatgataagttactatttaaaggccttaactagtgc 233  Q
    |||||||||| |||||||||||| |||||||| |||||||||||||    
T  3263817 cacatattttaatgataagttaccatttaaagaccttaactagtgc 3263862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 91 - 234
Target Start/End: Original strand, 19692696 - 19692840
Alignment:
Q  91 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgattaca 189  Q
    |||||||| |||| | ||| | |||||||||||||||  ||||||| |||||| ||||||| ||| |||||||||||||||| || ||||||||||||||    
T  19692696 ttgttaacgagtgtccccggggcactctttaaagatttcaaaagaagaaattaatttataaaaaaagtcaaatatttcgattttcaatgcattgattaca 19692795  T
Q  190 catattttcatgataagttactatttaaaggccttaactagtgcc 234  Q
    |||| ||| |||||||||||| |||||||||||||||| ||||||    
T  19692796 cataatttgatgataagttacaatttaaaggccttaaccagtgcc 19692840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 5356406 - 5356295
Alignment:
Q  116 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 215  Q
    ||||||| ||| | |||| || |||||| ||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  5356406 tctttaaggataccaaaataagaaattaatttataaaaacgtcaaatatttcgattttcgatgcattgattacacatattttcatgataagttaccattt 5356307  T
Q  216 aaaggccttaac 227  Q
    |||| |||||||    
T  5356306 aaagaccttaac 5356295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 114 - 234
Target Start/End: Original strand, 35395184 - 35395304
Alignment:
Q  114 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 213  Q
    ||||||||| ||||| ||||||| ||| |||||||||| ||||||||||||||  ||| |||||||||||||||||||||||||||||||||||| | ||    
T  35395184 actctttaaggattccaaaagaagaaactattttataaaaaagtcaaatattttaattttcgatgcattgattacacatattttcatgataagttgccat 35395283  T
Q  214 ttaaaggccttaactagtgcc 234  Q
    | |||||  ||||| ||||||    
T  35395284 taaaaggtgttaacgagtgcc 35395304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 88 - 233
Target Start/End: Original strand, 10051700 - 10051845
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| |||| | |  || |||||||||| |||| |||||||| |||| ||||||||| ||||||||||||||  |||  ||||||||||||||    
T  10051700 gtcttgttaacgagtgtccctaaggcactctttaaggattttaaaagaagaaataattttataaaaaagtcaaatatttatatttccgatgcattgatta 10051799  T
Q  188 cacatattttcatgataagttactatttaaaggccttaactagtgc 233  Q
     |||  ||||||| ||||||||| ||||||||| ||||||||||||    
T  10051800 tacaacttttcataataagttaccatttaaaggtcttaactagtgc 10051845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 28793305 - 28793446
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| ||||| ||||   | |||||||| ||||| ||||||| |||| ||||||||| |||||||||||||||||||  ||||||||| ||||    
T  28793305 gtcttgttaacgagtgcttccggtgcgctctttaaggattccaaaagaagaaatgattttataaaaaagtcaaatatttcgatttccgatgcattaatta 28793404  T
Q  188 cacatattttcatgataagttactatttaaaggccttaacta 229  Q
    || ||||||| ||||||| |||| |||||||  |||||||||    
T  28793405 catatatttttatgataatttaccatttaaataccttaacta 28793446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 90 - 227
Target Start/End: Complemental strand, 1354481 - 1354345
Alignment:
Q  90 cttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 189  Q
    ||||||||| |||||||||||||||||||| | | ||||||||| || |||||||||||||| ||||| |||||||||||||    ||  |||||||| |    
T  1354481 cttgttaacaagtgcctccgagacactcttaaga-attctaaaaaaagaaattattttataaaaaagttaaatatttcgatttctaatatattgattata 1354383  T
Q  190 catattttcatgataagttactatttaaaggccttaac 227  Q
     ||||||||||||||| ||||  |||||||||||||||    
T  1354382 tatattttcatgataatttaccttttaaaggccttaac 1354345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 116 - 234
Target Start/End: Original strand, 22473432 - 22473551
Alignment:
Q  116 tctttaaagattctaaaagaataaattattttataataaag-tcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatt 214  Q
    ||||||| ||||  ||||||| |||||||||||||| |||  ||||||||||  |||   ||||||||||||||||||||||||| |||||||||| |||    
T  22473432 tctttaaggatttcaaaagaagaaattattttataaaaaaaatcaaatattttaatttctgatgcattgattacacatattttcacgataagttaccatt 22473531  T
Q  215 taaaggccttaactagtgcc 234  Q
    ||||| ||||||||||||||    
T  22473532 taaagcccttaactagtgcc 22473551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 113 - 209
Target Start/End: Original strand, 21582367 - 21582463
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagtta 209  Q
    |||| ||||| ||||| |||||||||||||||||||||| | |||||||||||||||||   ||| || |||| ||||| |||||||||||||||||    
T  21582367 cactttttaaggattccaaaagaataaattattttataaaatagtcaaatatttcgatttctgatacaatgatcacacacattttcatgataagtta 21582463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 95 - 197
Target Start/End: Original strand, 14042440 - 14042542
Alignment:
Q  95 taaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatat 194  Q
    |||| |||| ||||| || |||||||||||||||||||| ||||||||||| | ||| |||||||||||||| ||||  | |||||||||||| ||| ||    
T  14042440 taacgagtgtctccgggatactctttaaagattctaaaataataaattattatttaaaaaagtcaaatattttgatttccaatgcattgattatacaaat 14042539  T
Q  195 ttt 197  Q
    |||    
T  14042540 ttt 14042542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 31889611 - 31889709
Alignment:
Q  114 actctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttact 211  Q
    ||||||||| ||||||||||||| |||||| ||||||| ||| || ||||||||| |||    ||||||||||||||||||||||||| | ||||||||    
T  31889611 actctttaacgattctaaaagaagaaattaatttataaaaaaagtaaaatatttcaatttctaatgcattgattacacatattttcataaaaagttact 31889709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 171
Target Start/End: Complemental strand, 4725979 - 4725897
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 171  Q
    ||||||||||| |||| | |||| ||||| ||||| ||||  |||||||||||||||||||||| ||||||||| |||||||||    
T  4725979 gtcttgttaacgagtgtccccgaaacactgtttaaggatttcaaaagaataaattattttataa-aaagtcaaagatttcgatt 4725897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 143 - 229
Target Start/End: Complemental strand, 142436 - 142350
Alignment:
Q  143 attttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaacta 229  Q
    ||||||||| ||| ||||||||||| |||   ||| ||||||||||||||| ||| ||||||||||||  |||||||| ||||||||    
T  142436 attttataaaaaaatcaaatatttcaatttctgatacattgattacacataattttatgataagttacattttaaagggcttaacta 142350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 22871913 - 22871967
Alignment:
Q  111 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatt 165  Q
    |||||||||||| ||||||||||||| ||| |||||||||| |||||||||||||    
T  22871913 gacactctttaaggattctaaaagaagaaaatattttataaaaaagtcaaatatt 22871967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 3758194 - 3758279
Alignment:
Q  112 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 197  Q
    |||||||||||| ||| ||||| ||| ||||||| | ||| ||||||||||||||||||| || ||||||||| || |||| ||||    
T  3758194 acactctttaaacattttaaaataatcaattattctttaaaaaagtcaaatatttcgattttcaatgcattgaatatacatttttt 3758279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 26663642 - 26663714
Alignment:
Q  125 attctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 197  Q
    ||||||||| || |||||||||| ||| |||||||||||||||||||  | ||| ||||||||||||| ||||    
T  26663642 attctaaaataagaaattattttttaaaaaagtcaaatatttcgatttccaatgtattgattacacatttttt 26663714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 26935237 - 26935309
Alignment:
Q  125 attctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 197  Q
    ||||||||| || |||||||||| ||| |||||||||||||||||||  | ||| ||||||||||||| ||||    
T  26935237 attctaaaataagaaattattttttaaaaaagtcaaatatttcgatttccaatgtattgattacacatttttt 26935309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 91 - 226
Target Start/End: Complemental strand, 14475133 - 14474998
Alignment:
Q  91 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 190  Q
    |||||||| ||||| |||| | | ||||| ||  ||| |||||||| |||||||| ||||| || |||||||||||| |||   ||||| |||||||||     
T  14475133 ttgttaacaagtgcttccggggctctcttcaagcattttaaaagaagaaattattctataaaaatgtcaaatatttcaatttcagatgctttgattacat 14475034  T
Q  191 atattttcatgataagttactatttaaaggccttaa 226  Q
    | |||||||  | |||||||||||| |||| |||||    
T  14475033 aaattttcaaaaaaagttactatttgaaggtcttaa 14474998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 27650944 - 27650866
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 166  Q
    ||||||||||| ||| ||||||  |||||||||||| |||| |||| || |||||||| ||||| ||||| ||||||||    
T  27650944 gtcttgttaacgagtacctccggaacactctttaaacattccaaaaaaagaaattattatataaaaaagttaaatattt 27650866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 37976444 - 37976497
Alignment:
Q  114 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttc 167  Q
    |||||||||| |||||||||||| ||||||||| |||| ||| |||||||||||    
T  37976444 actctttaaacattctaaaagaagaaattatttcataaaaaaatcaaatatttc 37976497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 12933327 - 12933381
Alignment:
Q  112 acactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 166  Q
    |||||||| || ||||  |||| ||||||||||||||||| ||||||||||||||    
T  12933327 acactcttcaacgatttcaaaataataaattattttataagaaagtcaaatattt 12933381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 24241256 - 24241210
Alignment:
Q  125 attctaaaagaataaattattttataataaagtcaaatatttcgatt 171  Q
    |||||||||||| |||||||||||  | |||||||||||||||||||    
T  24241256 attctaaaagaaaaaattattttaataaaaagtcaaatatttcgatt 24241210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 24241096 - 24241039
Alignment:
Q  140 attattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 197  Q
    |||||||||||| ||||||||||||||| ||| |  || ||||||||| |||||||||    
T  24241096 attattttataaaaaagtcaaatatttcaatttttaatacattgattatacatatttt 24241039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 43145883 - 43145943
Alignment:
Q  175 gatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcct 235  Q
    ||||||||||||||| | |||||||  | || |||||||||||||| ||||| ||||||||    
T  43145883 gatgcattgattacataaattttcaaaaaaaattactatttaaaggtcttaaatagtgcct 43145943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 88 - 235
Target Start/End: Original strand, 8789826 - 8789973
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| ||| | | || |||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||   |||||||||||||    
T  8789826 gtcttgttaacgagtactttcgggacactctttaaagattctaaaagaagaaattattttataaaaaagttaaatattttgatttctgatgcattgatta 8789925  T
Q  188 cacatattttcatgataagttactatttaaaggccttaactagtgcct 235  Q
    |||||||||||||| ||||||||  ||||||| ||||||| |||||||    
T  8789926 cacatattttcatgttaagttaccctttaaagaccttaaccagtgcct 8789973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 44941216 - 44941072
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| |||||| | |||||||||||||| ||||||||||||| ||| ||| |||||| ||||| ||| |||||||||  ||||||||||||||    
T  44941216 gtcttgttaacgagtgcc-ctgagacactctttaaggattctaaaagaagaaagtatgttataaaaaagttaaagatttcgatttccgatgcattgatta 44941118  T
Q  188 cacatattttcatgataagttactatttaaaggccttaactagtgc 233  Q
    || |||||||| |||||| |||| ||||||||||||||||||||||    
T  44941117 catatattttcctgataaattaccatttaaaggccttaactagtgc 44941072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 88 - 231
Target Start/End: Complemental strand, 20683133 - 20682990
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| |||||| ||| |||||||||||| ||||| ||||||| |||  ||||||||| ||| |||||||||||||||  ||||||||||||||    
T  20683133 gtcttgttaacgagtgcccccgggacactctttaaggattccaaaagaagaaaagattttataaaaaaatcaaatatttcgatttccgatgcattgatta 20683034  T
Q  188 cacatattttcatgataagttactatttaaaggccttaactagt 231  Q
    |||||||||| |||||||||||| || ||||  | |||||||||    
T  20683033 cacatatttttatgataagttaccatataaaaactttaactagt 20682990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 113 - 227
Target Start/End: Complemental strand, 8773784 - 8773670
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 212  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||   ||||||||||||||| ||||||||||| ||||||||      
T  8773784 cactctttaaagattctaaaagaagaaattattttataaaaaagtcaaatattttgatttctgatgcattgattacatatattttcatgttaagttaccc 8773685  T
Q  213 tttaaaggccttaac 227  Q
    ||||||| |||||||    
T  8773684 tttaaagaccttaac 8773670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 4238438 - 4238341
Alignment:
Q  111 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagtta 209  Q
    |||||||||||| ||||| ||||||| |||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  4238438 gacactctttaaggattcaaaaagaagaaattattttataaaaaaatcaaatatttcgattttcgatgcattgattacacatattttcat-ataagtta 4238341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 111 - 234
Target Start/End: Complemental strand, 18053130 - 18053008
Alignment:
Q  111 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttac 210  Q
    |||||||||||| ||||  ||||||| |||||||||||||| |||||||||||||| ||||  |||||||||||||| ||||| ||||||||||| ||||    
T  18053130 gacactctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatattttgatttccgatgcattgattatacatactttcatgataaattac 18053031  T
Q  211 tatttaaaggccttaactagtgcc 234  Q
      ||||||||||||||||| ||||    
T  18053030 -ctttaaaggccttaactaatgcc 18053008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 113 - 226
Target Start/End: Complemental strand, 42945125 - 42945012
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 212  Q
    |||| ||||| |||| |||||||| | |||||||||| | ||| |||||||||||||||  |  ||||||||||||||||||||| ||||||| ||||||    
T  42945125 cactttttaaggattttaaaagaaaacattattttattaaaaactcaaatatttcgatttccagtgcattgattacacatatttttatgataatttacta 42945026  T
Q  213 tttaaaggccttaa 226  Q
    ||||||||||||||    
T  42945025 tttaaaggccttaa 42945012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 88 - 199
Target Start/End: Complemental strand, 6761862 - 6761751
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| ||||| |||||| ||||||||||  |||| |||||||||||| ||| ||||| ||||||||||||||| |||  | ||||||||||||    
T  6761862 gtcttgttaacaagtgcttccgaggcactctttaagcattccaaaagaataaatcattctataaaaaagtcaaatatttcaatttccaatgcattgatta 6761763  T
Q  188 cacatattttca 199  Q
    || | |||||||    
T  6761762 cataaattttca 6761751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 116 - 226
Target Start/End: Complemental strand, 2393148 - 2393038
Alignment:
Q  116 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 215  Q
    ||||||| ||||||||||||| |||||| ||||||| |||||||||||||| ||||||| |  |||||||| ||||| |||||||   |||||||||| |    
T  2393148 tctttaaggattctaaaagaagaaattaatttataaaaaagtcaaatattttgattctcaagacattgatttcacatgttttcatacaaagttactatat 2393049  T
Q  216 aaaggccttaa 226  Q
    ||||| |||||    
T  2393048 aaaggtcttaa 2393038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 113 - 227
Target Start/End: Complemental strand, 34546379 - 34546265
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 212  Q
    |||||||| | ||||| ||| ||| |||||| ||||||| ||||||||||| |||||||   ||||||||||||||||| |||||||||||||||||  |    
T  34546379 cactctttgaggattccaaatgaagaaattaatttataaaaaagtcaaatacttcgatttctgatgcattgattacacacattttcatgataagttatca 34546280  T
Q  213 tttaaaggccttaac 227  Q
    ||||| || ||||||    
T  34546279 tttaatggtcttaac 34546265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 100 - 226
Target Start/End: Original strand, 42966938 - 42967066
Alignment:
Q  100 agtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgattacacatattttc 198  Q
    |||||||||||||||||||||||  || ||||||||| ||||||||| |||| ||| || ||||||||| |||| |||||||||||||||| | ||||||    
T  42966938 agtgcctccgagacactctttaagaatactaaaagaagaaattatttcataaaaaaagttaaatatttcaattcccgatgcattgattacataaattttc 42967037  T
Q  199 atgataag-ttactatttaaaggccttaa 226  Q
    |  | ||  |||||||||||||| |||||    
T  42967038 aaaaaaaaattactatttaaaggtcttaa 42967066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 1070568 - 1070639
Alignment:
Q  126 ttctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttc 198  Q
    ||||||||||||| |||||||||||||||||| |||||||| |||| || ||| |||||||||||||||||||    
T  1070568 ttctaaaagaatatattattttataataaagtaaaatattttgattttcaatg-attgattacacatattttc 1070639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 5962101 - 5961954
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaa-taaattattttat-aataaagtcaaatatttcgattctcgatgcattgat 185  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||||||  ||| ||||  || || ||| | ||||||||| |||  | ||||||||||    
T  5962101 gtcttgttaacgagtgcctccgagacactctttaagcattctaaaagaagaaaaatattccataaaaaaaattaaatatttcaatttccaatgcattgat 5962002  T
Q  186 tacacatattttcatgataagttactatttaaaggccttaactagtgc 233  Q
    |||| | |||||||  |  |||||||||||||||| ||||| ||||||    
T  5962001 tacataaattttcaaaaacagttactatttaaaggtcttaaatagtgc 5961954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 386 - 469
Target Start/End: Original strand, 10069229 - 10069312
Alignment:
Q  386 aaaagacatttaaatcaacaaaagttaatgaatctagttaaataattggactagatccattaacgtttgttaacctaaatattt 469  Q
    ||||||||||| | |||| ||||||| ||| |||| |||||| ||||||||||||| ||||||| |||||| ||||||||||||    
T  10069229 aaaagacatttgagtcaataaaagtttatgtatctggttaaaaaattggactagatacattaacttttgttgacctaaatattt 10069312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 3882586 - 3882700
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| ||||||  || | ||||||||||  ||||||||| ||  ||||||| | ||| || ||||||||||||| || || ||||||||||||    
T  3882586 gtcttgttaacgagtgccctcggggcactctttaagcattctaaaataagcaattattctttaaaaaggtcaaatatttcggttttcaatgcattgatta 3882685  T
Q  188 cacatattttcatga 202  Q
    |||| ||||||||||    
T  3882686 cacacattttcatga 3882700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 433643 - 433551
Alignment:
Q  91 ttgttaaccagtgcctccgag-acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattg 183  Q
    |||||||| |||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||| ||||| |||||||| |||| | |||||||||    
T  433643 ttgttaacgagtgcc-ccgaggacactctttaaggattccaaaagaataaattaatttataaaaaagttaaatattttgatttttgatgcattg 433551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 8898913 - 8898861
Alignment:
Q  112 acactctttaaagattctaaaagaataaattattttataataaagtcaaatat 164  Q
    |||| |||||| |||||||||| || |||||||||||||||||||||||||||    
T  8898913 acaccctttaatgattctaaaataagaaattattttataataaagtcaaatat 8898861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 18227092 - 18227204
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| |||| |||||  |||||||||||| ||| ||||| ||  ||||||| |  |  ||||||||||||||||||| || ||||||||||||    
T  18227092 gtcttgttaacgagtgtctccggaacactctttaaacattataaaataagtaattattcttcataaaagtcaaatatttcgattttcaatgcattgatta 18227191  T
Q  188 cacatattttcat 200  Q
     | | ||||||||    
T  18227192 aatacattttcat 18227204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 2826066 - 2825983
Alignment:
Q  114 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 197  Q
    |||||||||  || |||||| || |||||||||| ||| ||||| |||||||||||||  | |||||||||||||||| |||||    
T  2826066 actctttaagcatactaaaataagaaattattttttaaaaaagtaaaatatttcgatttccaatgcattgattacacacatttt 2825983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 13442703 - 13442636
Alignment:
Q  100 agtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttc 167  Q
    |||||||||||   ||||||||||||||| |||||||||||||||||||| || ||||| |||||||||    
T  13442703 agtgcctccgaagtactctttaaagattc-aaaagaataaattattttataaaaaaagttaaatatttc 13442636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 35228732 - 35228816
Alignment:
Q  116 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 200  Q
    ||||||| ||||  ||||||| |||||||||| ||| ||  |||||||||||||||    ||||||| |||||||||||||||||    
T  35228732 tctttaaggatttcaaaagaagaaattattttctaaaaagatcaaatatttcgatttctaatgcatttattacacatattttcat 35228816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 3199599 - 3199541
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 171  Q
    ||||||||||  ||||||||| || |||||||||||||| ||| |||||||||| ||||    
T  3199599 cactctttaataattctaaaataagaaattattttataaaaaattcaaatattttgatt 3199541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 7271769 - 7271880
Alignment:
Q  111 gacactctttaaagattctaaaagaataaattattttataataaa----gtcaaatatttcgattctcgatgcattgattacacatattttcatgataag 206  Q
    |||||||||||| |||||||||| || ||| ||| |||||| |||    |||||||||||  |||  | |||||||||||||| |||||||||| | |||    
T  7271769 gacactctttaaggattctaaaaaaagaaactatcttataaaaaaaaaagtcaaatatttttatttccaatgcattgattacatatattttcataaaaag 7271868  T
Q  207 ttactatttaaa 218  Q
    |||  |||||||    
T  7271869 ttatcatttaaa 7271880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 226
Target Start/End: Complemental strand, 14102435 - 14102297
Alignment:
Q  89 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgatta 187  Q
    |||||||||| ||||||||||   ||||||||||| || | |||| || ||||||||| | || ||| || |||||||||||||  | || |||||||||    
T  14102435 tcttgttaacgagtgcctccggagcactctttaaacatgccaaaataagaaattatttaaaaaaaaaagttaaatatttcgatttccaatacattgatta 14102336  T
Q  188 cacatattttcatgataagttactatttaaaggccttaa 226  Q
    ||||  ||||||| |  |||||||| ||| || ||||||    
T  14102335 cacactttttcataaatagttactacttatagtccttaa 14102297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 31448400 - 31448315
Alignment:
Q  112 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 197  Q
    ||||||||||||||||   |||||| |||||||||||||| ||| | ||| |||| ||||  |||| |||| ||||| ||||||||    
T  31448400 acactctttaaagatttctaaagaagaaattattttataaaaaatttaaaaattttgatttccgatacattaattactcatatttt 31448315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 45212057 - 45212110
Alignment:
Q  118 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 171  Q
    ||||| ||||||||||  |||||||||||||||| ||| |||||||||| ||||    
T  45212057 tttaaggattctaaaaagataaattattttataaaaaaatcaaatattttgatt 45212110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 33276005 - 33275918
Alignment:
Q  112 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 200  Q
    |||||||||||  ||||||||| || |||||||||| ||| ||||| ||||||||| ||| || || ||| || |||||| ||||||||    
T  33276005 acactctttaagcattctaaaacaagaaattattttttaaaaaagttaaatatttcaattttcaatacataga-tacacacattttcat 33275918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 114 - 234
Target Start/End: Complemental strand, 30413030 - 30412910
Alignment:
Q  114 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 213  Q
    ||||||||| ||||  ||||||| ||| |||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||||| |||||||    
T  30413030 actctttaaggatttcaaaagaagaaactattttatgataaagtcaaatatttcgattcccgatgcattgattatacatattttcgtgataaattactat 30412931  T
Q  214 ttaaaggccttaactagtgcc 234  Q
    |||||||||||||| ||||||    
T  30412930 ttaaaggccttaaccagtgcc 30412910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 88 - 234
Target Start/End: Original strand, 8170001 - 8170147
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| ||| |  |||  ||||||||||| ||||| ||||||| |||||||||||||| |||||||||||||| ||||  |||| |||||||||    
T  8170001 gtcttgttaacaagtactcccggaacactctttaaggattccaaaagaagaaattattttataaaaaagtcaaatattttgatttccgatacattgatta 8170100  T
Q  188 cacatattttcatgataagttactatttaaaggccttaactagtgcc 234  Q
     |||||| |||||||||||||||| ||||||| ||||||||||||||    
T  8170101 tacatatgttcatgataagttactttttaaagaccttaactagtgcc 8170147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 124 - 234
Target Start/End: Original strand, 48137789 - 48137899
Alignment:
Q  124 gattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggcct 223  Q
    ||||| ||||||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| ||||||| |||||||||||| || |    
T  48137789 gattccaaaagaagaaattattttataaaaaagtcaaatattttgattttcgatgcattgattacacatatttttatgataaattactatttaaaagcat 48137888  T
Q  224 taactagtgcc 234  Q
    |||||||||||    
T  48137889 taactagtgcc 48137899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 42493703 - 42493798
Alignment:
Q  113 cactctttaaagattctaaaagaataaattatttt-ataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagt 207  Q
    |||||||||| ||||| ||||||| |||||||||| |||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  42493703 cactctttaaggattccaaaagaagaaattattttgataaaaaagtcaaatattttgattttcgatgcattgattacacatattttcatgataagt 42493798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 88 - 219
Target Start/End: Original strand, 47507580 - 47507711
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| |||| ||||| | |||||||||| ||||||||||||| |||| ||||||||| ||| ||||| ||||| |||  ||||| ||||||||    
T  47507580 gtcttgttaacgagtgtctccggggcactctttaaggattctaaaagaagaaataattttataaaaaaatcaaagatttcaatttccgatgtattgatta 47507679  T
Q  188 cacatattttcatgataagttactatttaaag 219  Q
    ||||| ||||||||| ||||||| ||||||||    
T  47507680 cacattttttcatgagaagttaccatttaaag 47507711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 92 - 230
Target Start/End: Original strand, 38452146 - 38452283
Alignment:
Q  92 tgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacaca 191  Q
    ||||||| |||||| |||| ||| ||||||| ||||  ||||||| |||||||||||||| ||||||||||||||| |||  |||||||||| |||||||    
T  38452146 tgttaacgagtgcccccga-acattctttaaggatttaaaaagaagaaattattttataaaaaagtcaaatatttcaatttccgatgcattggttacaca 38452244  T
Q  192 tattttcatgataagttactatttaaaggccttaactag 230  Q
    ||||||||| |||| |||   ||||||||||||||||||    
T  38452245 tattttcataataaattatcttttaaaggccttaactag 38452283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 2964049 - 2964146
Alignment:
Q  118 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 215  Q
    ||||||||||||||||||| |||||||||||||| ||| | ||| |||| |||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  2964049 tttaaagattctaaaagaagaaattattttataaaaaaattaaaaattttgattttcgatacattgattacacatatttttatgataagttactattt 2964146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 88 - 220
Target Start/End: Original strand, 16878677 - 16878809
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    |||||||||||  |||  |||| |||||||||||||||||| | ||  | ||||||||| |||| ||||| |||||||||||||||| ||||||||||||    
T  16878677 gtcttgttaacaggtgtttccgggacactctttaaagattcaataaagagaaattatttcataaaaaagttaaatatttcgattctcaatgcattgatta 16878776  T
Q  188 cacatattttcatgataagttactatttaaagg 220  Q
    || ||||||| |||  |||||||||||||||||    
T  16878777 caaatatttttatgcaaagttactatttaaagg 16878809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 115 - 226
Target Start/End: Complemental strand, 44391537 - 44391426
Alignment:
Q  115 ctctttaaagattctaaaagaataaattattttataataaagtc-aaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 213  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |  |||||||||||| | ||||||||||   ||||||| ||    
T  44391537 ctctttaaagattctaaaagaataaattattttataa-aaagtcaaaatatttcgatttttaatgcattgattatatatattttcatacaaagttaccat 44391439  T
Q  214 ttaaaggccttaa 226  Q
    ||||||| |||||    
T  44391438 ttaaaggtcttaa 44391426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 46684626 - 46684550
Alignment:
Q  154 aagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactag 230  Q
    |||||||||||||||||| |||| |||||||||||| ||||||||||||||| |||| |||||||||||||||||||    
T  46684626 aagtcaaatatttcgattttcgacgcattgattacatatattttcatgataaattaccatttaaaggccttaactag 46684550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 5248088 - 5248179
Alignment:
Q  111 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatga 202  Q
    |||| ||||||| ||||  ||||||| |||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||    
T  5248088 gacattctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatatttcgattattgatgcattgattacacatatttttatga 5248179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 113 - 205
Target Start/End: Original strand, 2741168 - 2741260
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataa 205  Q
    |||||||||| |||| |||||||| |||||||||||| | ||| |||||||||| ||||  ||||||||||||||||||||||||||| ||||    
T  2741168 cactctttaaggattttaaaagaaaaaattattttattaaaaaatcaaatattttgatttccgatgcattgattacacatattttcataataa 2741260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 111 - 229
Target Start/End: Complemental strand, 15034911 - 15034793
Alignment:
Q  111 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcatt-gattacacatattttcatgataagtta 209  Q
    |||||||||||| ||||| || | || ||| |||||||||| ||||||||||||||||||   | ||||||| |||||||| ||||||||| ||||||||    
T  15034911 gacactctttaaggattccaagaaaagaaaatattttataa-aaagtcaaatatttcgatatccaatgcatttgattacacgtattttcataataagtta 15034813  T
Q  210 ctatttaaaggccttaacta 229  Q
    |  |||||||||||||||||    
T  15034812 ccttttaaaggccttaacta 15034793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 116 - 224
Target Start/End: Original strand, 43670409 - 43670517
Alignment:
Q  116 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 215  Q
    |||||||||||| |||| ||| |||| ||||||||| ||| ||||| |||| |||| |||||||| |||||||| || |||| ||||||| |||| ||||    
T  43670409 tctttaaagattttaaatgaagaaataattttataaaaaaatcaaagattttgattttcgatgcactgattacatatgtttttatgataaattaccattt 43670508  T
Q  216 aaaggcctt 224  Q
    |||| ||||    
T  43670509 aaagacctt 43670517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 47305592 - 47305516
Alignment:
Q  159 aaatatttcga-ttctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcc 234  Q
    ||||||||||| || ||||| ||| |||||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  47305592 aaatatttcgaattttcgatccatagattacacatattttcatgataagttaccatttaaacaccttaactagtgcc 47305516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 676488 - 676400
Alignment:
Q  108 cgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 197  Q
    |||||||||||||||| ||||||||| ||  ||||||||  ||| ||||| ||||||||||||| |  ||||||||||||||||||||||    
T  676488 cgagacactctttaaacattctaaaataagtaattatttattaa-aaagttaaatatttcgattttaaatgcattgattacacatatttt 676400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 37352535 - 37352436
Alignment:
Q  100 agtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 199  Q
    ||||||||||||||| ||||||| ||||| |||| || ||||||||  || | ||||||||||||||| |||  | ||||||| |||||||| |||||||    
T  37352535 agtgcctccgagacattctttaaggattcaaaaacaagaaattattccattaaaaagtcaaatatttcaatttccaatgcattaattacacaaattttca 37352436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 189
Target Start/End: Complemental strand, 33887971 - 33887887
Alignment:
Q  105 ctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 189  Q
    ||||||||||||||||||  |||| |||| ||  ||||||| | ||| ||||||||||||||| ||| || ||||||||||||||    
T  33887971 ctccgagacactctttaagcattccaaaataaataattattctttaaaaaagtcaaatatttcaattttcaatgcattgattaca 33887887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 232
Target Start/End: Complemental strand, 36015141 - 36015002
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| | || ||||| |||| ||||||| ||||  |||| || |||||||||||||| ||| |||||||| || ||| || ||  ||||||||    
T  36015141 gtcttgttaacgaatgtctccgggacattctttaaggatttcaaaaaaagaaattattttataaaaaaatcaaatatgtcaattttcaatttattgatta 36015042  T
Q  188 cacatattttcatgataagttactatttaaaggccttaactagtg 232  Q
    ||| ||||||     ||||||||  ||||||| ||||||||||||    
T  36015041 cacgtatttt-----taagttaccttttaaagaccttaactagtg 36015002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 228
Target Start/End: Complemental strand, 36285887 - 36285774
Alignment:
Q  114 actctttaaagattctaaaagaataaattattttataataaag-tcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 212  Q
    |||||||||| ||| |||||||| |||  ||||||||| |||  |||||||||| ||||  |||| |||||||||||  |||||| ||||||||||||      
T  36285887 actctttaaaaattttaaaagaagaaagcattttataaaaaaaatcaaatattttgatttccgatacattgattaca--tatttttatgataagttacat 36285790  T
Q  213 tttaaaggccttaact 228  Q
    |||||||| |||||||    
T  36285789 tttaaaggacttaact 36285774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 171
Target Start/End: Complemental strand, 45375483 - 45375399
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaa-ttattttataataaagtcaaatatttcgatt 171  Q
    ||||| ||||| |||||||||| | |||||||||| ||||||||||||| ||| |||| |||||| ||||| |||||||| ||||    
T  45375483 gtcttattaacgagtgcctccggggcactctttaaggattctaaaagaagaaacttatgttataaaaaagttaaatattttgatt 45375399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 15995924 - 15995971
Alignment:
Q  153 aaagtcaaatatttcgattctcgatgcattgattacacatattttcat 200  Q
    ||||| ||||||||||||| || |||||||||||||||||||||||||    
T  15995924 aaagttaaatatttcgattttcaatgcattgattacacatattttcat 15995971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 200
Target Start/End: Original strand, 35754017 - 35754126
Alignment:
Q  91 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 190  Q
    |||| ||| |||| ||| || |||||||||||  |||  |||| || |||||||||||||| | | |||| |||||||||| || ||||||| |||||||    
T  35754017 ttgtcaacgagtgtctctgaaacactctttaagaatttcaaaaaaagaaattattttataaaataatcaagtatttcgattttcaatgcattaattacac 35754116  T
Q  191 atattttcat 200  Q
    || |||||||    
T  35754117 atgttttcat 35754126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 44495238 - 44495314
Alignment:
Q  140 attattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattta 216  Q
    |||||||||||| ||| | ||||||||||||| |  || ||||||||||||||||||| || | |||||| ||||||    
T  44495238 attattttataaaaaatttaaatatttcgatttttaattcattgattacacatatttttataacaagttattattta 44495314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 14574768 - 14574815
Alignment:
Q  153 aaagtcaaatatttcgattctcgatgcattgattacacatattttcat 200  Q
    ||||| ||||| ||||||| || |||||||||||||||||||||||||    
T  14574768 aaagttaaatacttcgattttcaatgcattgattacacatattttcat 14574815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 189
Target Start/End: Complemental strand, 35599944 - 35599837
Alignment:
Q  82 ttaattgtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcat 181  Q
    ||||| ||||||||||| ||||||||||||| |||||||||| || |||||  |  |||||||| | ||| ||| ||||||| ||| | | || ||||||    
T  35599944 ttaatggtcttgttaacgagtgcctccgagatactctttaaacatactaaattaggaaattattctttaaaaaattcaaatagttcaaatttcaatgcat 35599845  T
Q  182 tgattaca 189  Q
    ||| ||||    
T  35599844 tgaataca 35599837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 31477085 - 31477175
Alignment:
Q  111 gacactctttaaagattctaaaagaat-aaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 200  Q
    |||||| ||||| |||||||||| ||  |||||||| ||||| || |||||| |  | |||| || |||||||||||||||||||||||||    
T  31477085 gacactatttaaggattctaaaaaaaagaaattattgtataaaaacgtcaaaaaaattgattttcaatgcattgattacacatattttcat 31477175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 200
Target Start/End: Complemental strand, 10032058 - 10031945
Alignment:
Q  87 tgtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatt 186  Q
    ||||| |||||| |||||| ||| ||||||||||||  |||| ||||  |  ||||||||| | | ||||| |||| ||||||||  | |||||||||||    
T  10032058 tgtctcgttaacgagtgcccccgggacactctttaagcattccaaaattagtaattatttttttaaaaagttaaatgtttcgatttccaatgcattgatt 10031959  T
Q  187 acacatattttcat 200  Q
    |||||  |||||||    
T  10031958 acacactttttcat 10031945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 25120271 - 25120218
Alignment:
Q  110 agacactctttaaagattctaaaagaataaattattttataataaagtcaaata 163  Q
    ||||||||||||||||||  |||  ||||||||||||| ||| |||||||||||    
T  25120271 agacactctttaaagatttcaaattaataaattattttttaaaaaagtcaaata 25120218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 27359398 - 27359466
Alignment:
Q  159 aaatatttcgattctcgatgcattgattacacatattttcat-gataagttactatttaaaggccttaa 226  Q
    |||||||||||||  | ||||||||||||||| | |||||||  | ||||||||||||||||| |||||    
T  27359398 aaatatttcgatttccaatgcattgattacacttgttttcataaaaaagttactatttaaaggtcttaa 27359466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 88 - 234
Target Start/End: Original strand, 31206280 - 31206426
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| ||| ||  ||||  ||||||||| ||||| ||||| | |||||||||||||| ||| |||||||||| ||||  ||||||||||||||    
T  31206280 gtcttgttaacgagtccccacgaggtactctttaaggattcaaaaagtagaaattattttataaaaaaatcaaatattttgatttccgatgcattgatta 31206379  T
Q  188 cacatattttcatgataagttactatttaaaggccttaactagtgcc 234  Q
    |||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  31206380 cacatatttttatgataaattactatttaaaggccttaactaatgcc 31206426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 38956884 - 38956992
Alignment:
Q  118 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaa 217  Q
    ||||| ||||||||||||   ||||| ||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||  ||||||    
T  38956884 tttaaggattctaaaagatgtaattaatttataaaaaagtcaaatatttcgatttccgatgcattgattacacatattttcatgataagttatcatttaa 38956983  T
Q  218 aggccttaa 226  Q
    || ||||||    
T  38956984 agaccttaa 38956992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 5217869 - 5217747
Alignment:
Q  111 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttac 210  Q
    |||||||||||| ||||| ||||  |||||| ||||||||| |||||||||||||||||||  ||||| |||||||||||||||||| ||||||| ||||    
T  5217869 gacactctttaaggattcaaaaa--ataaatgattttataaaaaagtcaaatatttcgatttccgatgtattgattacacatatttttatgataaattac 5217772  T
Q  211 tatttaaaggccttaactagtgcct 235  Q
     || |||||  ||||||||||||||    
T  5217771 catataaagatcttaactagtgcct 5217747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 45368834 - 45368729
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 212  Q
    |||||||||| ||||| |||| || |||||||||||||| ||||| ||||||||| ||| |||||||| |||||| |||||||||||||||||||||| |    
T  45368834 cactctttaaggattccaaaaaaagaaattattttataaaaaagttaaatatttcaattttcgatgcaatgattatacatattttcatgataagttacca 45368735  T
Q  213 tttaaa 218  Q
    ||||||    
T  45368734 tttaaa 45368729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 5020162 - 5020051
Alignment:
Q  114 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 213  Q
    ||||||||| ||||||||||||| |||| ||||||||| ||||||||| ||||| |||  |||| ||||||||||||  |||||||||| ||||||| ||    
T  5020162 actctttaaggattctaaaagaagaaataattttataaaaaagtcaaagatttcaatttccgatacattgattacac--attttcatgacaagttaccat 5020065  T
Q  214 ttaaaggccttaac 227  Q
    ||||||||||||||    
T  5020064 ttaaaggccttaac 5020051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 115 - 226
Target Start/End: Complemental strand, 20169827 - 20169716
Alignment:
Q  115 ctctttaaagattctaaaagaataaattattttataataaagtc-aaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 213  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |  |||||||||||| | ||||||||||   ||||||| ||    
T  20169827 ctctttaaagattctaaaagaataaattattttataa-aaagtcaaaatatttcgatttttaatgcattgattatatatattttcatacaaagttaccat 20169729  T
Q  214 ttaaaggccttaa 226  Q
    ||||||| |||||    
T  20169728 ttaaaggtcttaa 20169716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 9632898 - 9633040
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaa--taaattattttataataaagtcaaatatttcgattctcgatgcattgat 185  Q
    ||||||||||| |||| ||||| | |||||||||||||||  |||| ||  ||||  ||| || || |||||||||||||| ||||   |||||||||||    
T  9632898 gtcttgttaacaagtgtctccgggtcactctttaaagatttcaaaaaaaaataaaaaattataaaa-aaagtcaaatattttgatttcagatgcattgat 9632996  T
Q  186 tacacatattttcatgataagttactatttaaaggccttaacta 229  Q
    ||||||||||||||| |||| || | |||||||| |||||||||    
T  9632997 tacacatattttcataataaattgccatttaaagaccttaacta 9633040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 33636685 - 33636767
Alignment:
Q  85 attgtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttc 167  Q
    |||||||| ||||| |||||  ||||||||||||||||  |||||||||| | ||||||||| |||| |||||||||| ||||    
T  33636685 attgtcttattaacgagtgcgcccgagacactctttaagcattctaaaaggagaaattatttcataaaaaagtcaaatgtttc 33636767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 91 - 217
Target Start/End: Complemental strand, 39691247 - 39691121
Alignment:
Q  91 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 190  Q
    |||||||| ||||||  |||||||||||||||  |||| | |  || |||||||| | ||| ||||||||||| ||| ||| || ||||||||| |||||    
T  39691247 ttgttaacgagtgccctcgagacactctttaagcattccacattaaaaaattattctttaaaaaagtcaaatagttcaattttcaatgcattgaatacac 39691148  T
Q  191 atattttcatgataagttactatttaa 217  Q
    | |||||||| | || |||||||||||    
T  39691147 aaattttcataaaaaattactatttaa 39691121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 226
Target Start/End: Complemental strand, 7044442 - 7044329
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 212  Q
    |||||||||| ||||||||||||| |||||| ||||| | ||||||||| ||||||||| |  | || |||||||||| | |||||||   |||||| ||    
T  7044442 cactctttaaggattctaaaagaagaaattaatttattaaaaagtcaaacatttcgatttttaaggctttgattacacgtgttttcatacaaagttatta 7044343  T
Q  213 tttaaaggccttaa 226  Q
    | |||||| |||||    
T  7044342 tataaaggtcttaa 7044329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 188
Target Start/End: Complemental strand, 24103187 - 24103087
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    |||| |||||| | ||| |||||||||||||||||  ||||||||| || |||||||||| | | || ||||||| ||||||||  ||||||| ||||||    
T  24103187 gtctcgttaacgattgcttccgagacactctttaagcattctaaaataagaaattatttttttaaaaggtcaaatgtttcgatttccgatgcaatgatta 24103088  T
Q  188 c 188  Q
    |    
T  24103087 c 24103087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 39932813 - 39932721
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgca 180  Q
    ||||||||||| | | ||||||| |||||||||||| ||||||||||||  ||| |||  |||| ||||||||||||||| ||| || |||||    
T  39932813 gtcttgttaacgaattcctccgaaacactctttaaacattctaaaagaagtaataattccataaaaaagtcaaatatttcaattttccatgca 39932721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 226
Target Start/End: Complemental strand, 10335159 - 10335020
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgatt 186  Q
    ||||||||||| ||||| | ||   ||||||||||  |||| |||||||||||||||| ||| || |||||||||||||   ||| || ||||||| |||    
T  10335159 gtcttgttaacgagtgcattcggagcactctttaagaattccaaaagaataaattattctataaaaaaagtcaaatattataattttcaatgcattaatt 10335060  T
Q  187 acacatattttcatgataagttactatttaaaggccttaa 226  Q
    | ||| |||||||  | || |||| |||||||||||||||    
T  10335059 atacaaattttcacaaaaaattacaatttaaaggccttaa 10335020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 36819793 - 36819755
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataa 151  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  36819793 cactctttaaagattctaaaagaaaaaattattttataa 36819755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 163
Target Start/End: Complemental strand, 37564468 - 37564393
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaata 163  Q
    ||||||||||| |||||||| | ||||||||||||| || |||||  || |||||||| | ||| |||||||||||    
T  37564468 gtcttgttaacgagtgcctctgggacactctttaaacatgctaaattaagaaattattctttaaaaaagtcaaata 37564393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 2124203 - 2124141
Alignment:
Q  89 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataa 151  Q
    |||||||||| ||||   |||||||| |||||||| |||||||||||| |||||||| |||||    
T  2124203 tcttgttaacgagtgttcccgagacattctttaaacattctaaaagaagaaattattctataa 2124141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 5968437 - 5968377
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattatttta 148  Q
    ||||||||||| |||||||||  | ||||||||||| ||||||||| ||  ||||||||||    
T  5968437 gtcttgttaacgagtgcctccagggcactctttaaacattctaaaacaagcaattatttta 5968377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 22209376 - 22209488
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||| ||||| |||| ||||| ||||||||||||  ||| ||||||||  |||||||   ||| ||||| |||||||| ||||  | |  |||||||||    
T  22209376 gtcttattaacaagtgtctccgggacactctttaagcattttaaaagaagcaattattccttaaaaaagttaaatattttgatttccaagacattgatta 22209475  T
Q  188 cacatattttcat 200  Q
    || ||||||||||    
T  22209476 catatattttcat 22209488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 12383129 - 12383008
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 212  Q
    ||||||||||  |||  ||||| | |||||||||||||| ||||| |||||||| ||||  |||||||||||||| ||||||||| ||||||| ||||||    
T  12383129 cactctttaagaatttcaaaaggagaaattattttataaaaaagttaaatattttgatttccgatgcattgattatacatatttttatgataaattacta 12383030  T
Q  213 tttaaaggccttaactagtgcc 234  Q
    |||||||| |||||||||||||    
T  12383029 tttaaaggacttaactagtgcc 12383008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 113 - 226
Target Start/End: Original strand, 16442075 - 16442188
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 212  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| |||| || |   ||||||||||||| |||||||   |||||||||    
T  16442075 cactctttaaagattctaaaagaataaattagtttataaaaaagtcaaacattttgattttcaaaatattgattacacatgttttcatacaaagttacta 16442174  T
Q  213 tttaaaggccttaa 226  Q
    | |||||| |||||    
T  16442175 tataaaggtcttaa 16442188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 116 - 211
Target Start/End: Original strand, 8176324 - 8176419
Alignment:
Q  116 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttact 211  Q
    ||||||| ||||||||||||| |||| | ||| ||| ||||||||| ||||| ||| |||||||||| ||||||||||||||||| ||||||||||    
T  8176324 tctttaaggattctaaaagaagaaataaatttttaaaaaagtcaaaaatttcaattttcgatgcattaattacacatattttcataataagttact 8176419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 12307821 - 12307904
Alignment:
Q  114 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 197  Q
    ||||||||| ||||  ||||||| |||||||||||||| ||||||||||||||  ||| || || |||| ||||||||||||||    
T  12307821 actctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatattttaattttcaatacattaattacacatatttt 12307904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 88 - 217
Target Start/End: Complemental strand, 31702874 - 31702747
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| ||||  |||| | ||||||||||  |||  ||||||| |||||||||||||| ||||| || |||||  |||    ||||||||||||    
T  31702874 gtcttgttaacgagtg--tccggggcactctttaagaatttcaaaagaagaaattattttataaaaaagttaagtattttaatttctaatgcattgatta 31702777  T
Q  188 cacatattttcatgataagttactatttaa 217  Q
    |||||||||| || | ||||||||||||||    
T  31702776 cacatatttttataaaaagttactatttaa 31702747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 199
Target Start/End: Original strand, 7465451 - 7465558
Alignment:
Q  91 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 190  Q
    |||||||| |||||| ||| | |||| ||||| |||||| |||||| ||||| ||  |||| ||||||||||||||| |||  ||||||||||||||||     
T  7465451 ttgttaacgagtgcccccggg-cactttttaaggattcttaaagaagaaattgttccataaaaaagtcaaatatttcaatttccgatgcattgattacat 7465549  T
Q  191 atattttca 199  Q
    | |||||||    
T  7465550 aaattttca 7465558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 22695549 - 22695473
Alignment:
Q  157 tcaaatatttcgattctcgatgcattgattacacata-ttttcatgataagttactatttaaaggccttaactagtg 232  Q
    ||||||||||| ||| ||||||||||||||||||||| |||| || | ||||||| ||||||| |||||||| ||||    
T  22695549 tcaaatatttcaattttcgatgcattgattacacatatttttaataaaaagttaccatttaaaagccttaacgagtg 22695473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 22696071 - 22696000
Alignment:
Q  89 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaa 160  Q
    |||||||||| |||||||| ||  |||||||||| ||||| ||||||| |||||||||||||| ||| ||||    
T  22696071 tcttgttaacgagtgcctctgatgcactctttaaggattccaaaagaagaaattattttataaaaaaatcaa 22696000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 35241410 - 35241509
Alignment:
Q  117 ctttaaagattctaaaagaataaattattttataata-aagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 215  Q
    |||||| |||| ||||| || |||||||||||||| | || | |||||||| ||||   ||||||||||||| ||||||||| |||||||||||| ||||    
T  35241410 ctttaaggattttaaaaaaagaaattattttataaaagaaattaaatattttgatttctgatgcattgattatacatatttttatgataagttaccattt 35241509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 113 - 226
Target Start/End: Complemental strand, 6048381 - 6048268
Alignment:
Q  113 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 212  Q
    ||||||||||| |||||||||||| |||||| ||||||| ||||| ||| ||||  |||  | |   ||||||||||||| |||||||   |||||||||    
T  6048381 cactctttaaaaattctaaaagaagaaattaatttataaaaaagtgaaacattttaatttccaagatattgattacacatgttttcatacaaagttacta 6048282  T
Q  213 tttaaaggccttaa 226  Q
    | |||||| |||||    
T  6048281 tataaaggtcttaa 6048268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 415
Target Start/End: Complemental strand, 32045211 - 32045160
Alignment:
Q  363 tactccctccgatcctttttataaaaagacatttaaatcaacaaaagttaatg 415  Q
    |||||||||||||||| ||||||||| || |||||| ||||||||||||||||    
T  32045211 tactccctccgatcctatttataaaa-gatatttaactcaacaaaagttaatg 32045160  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 26311807 - 26311889
Alignment:
Q  116 tctttaaagattctaaaagaataaattattttataataa-agtcaaatatttcgattctcgatgcattgattacacatatttt 197  Q
    ||||||| |||||| ||||||||||||| ||||||| ||  || |||||||| |||| || || |||| ||||||||||||||    
T  26311807 tctttaaggattctgaaagaataaattaatttataaaaatggttaaatattttgattttcaatacattaattacacatatttt 26311889  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 189
Target Start/End: Original strand, 30509286 - 30509387
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||||||| |||| |||||  |||||||||||  || | |||| ||  ||||||| | ||| ||| ||||| ||||||||| || ||||||||||||    
T  30509286 gtcttgttaacgagtgtctccggaacactctttaagcataccaaaataagcaattattctttaaaaaaatcaaacatttcgattttcaatgcattgatta 30509385  T
Q  188 ca 189  Q
    ||    
T  30509386 ca 30509387  T

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Target: scaffold0246 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 189
Target Start/End: Complemental strand, 18245 - 18144
Alignment:
Q  88 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 187  Q
    ||||||| ||| |||||||| | |||||||||||| ||| ||||||||| ||||||| | |||| ||||||||||||||| |||| |||| |||||||||    
T  18245 gtcttgtaaacgagtgcctctgggacactctttaaggatgctaaaagaagaaattatgtcataaaaaagtcaaatatttcaattcccgatacattgatta 18146  T
Q  188 ca 189  Q
    ||    
T  18145 ca 18144  T

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