View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12822_low_3 (Length: 526)
Name: NF12822_low_3
Description: NF12822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12822_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Complemental strand, 35685061 - 35684553
Alignment:
| Q |
1 |
aatttcggatctactaggtttagaactacggcgctcctcctccgacattggcttaaacttggcagtgtcaacagcattaggtattacaaaaaccttctcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35685061 |
aatttcggatctactaggtttagaactacggcgctcctcctccgacattggcttaaacttggcagtgtcaacagcattaggtattacaaaaaccttctcc |
35684962 |
T |
|
| Q |
101 |
ggcgccaaacccgacctcaaaaccgtgttctccttacttgtatgagaaacacatatagcctgactcacatctgccaaggtaaactgcaaaaccttgttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35684961 |
ggcgccaaacccgacctcaaaaccgtgttctccttacttgtatgagaaacacatatagcctgactcacatctgccaaggtaaactgcaaaaccttgttca |
35684862 |
T |
|
| Q |
201 |
tgtgtatacttccagcatcactaaaaccattcaaggaatgatcggtaaacacaaccttgtatcccatgattctagcatgcataagggcctcatgacaaag |
300 |
Q |
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| T |
35684861 |
tgtgtatacttccagcatcactaaaaccattcaaggaatgatcggtaaacacaaccttgtatcccatgattctagcatgcataagggcctcatgacaaag |
35684762 |
T |
|
| Q |
301 |
tgttgaaaaggtttgatgtccatgcgcaacggtaattctttctcgagtgagaatagttcttataattgggagtgttccatgcaaagttggaaatgtgttc |
400 |
Q |
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| T |
35684761 |
tgttgaaaaggtttgatgtccatgcacaacggtaattctttctcgagtgagaatagttcttataattgggagtgttccatgcaaagttggaaatgtgttc |
35684662 |
T |
|
| Q |
401 |
tgattaaagaatggtctccatggaacatagtagatttttaaaccacctgtcatgtatctaaccccagagcgttttccataagcatgagttacaaccacca |
500 |
Q |
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| T |
35684661 |
tgattaaagaatggtctccatggaacatagtagacttttaaaccacctgtcatgtatctaaccccagagcgttttccataagcatgagttacaaccacca |
35684562 |
T |
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| Q |
501 |
cctgatcat |
509 |
Q |
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| T |
35684561 |
cctgatcat |
35684553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 68 - 505
Target Start/End: Original strand, 40672148 - 40672585
Alignment:
| Q |
68 |
tcaacagcattaggtattacaaaaaccttctccggcgccaaacccgacctcaaaaccgtgttctccttacttgtatgagaaacacatatagcctgactca |
167 |
Q |
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||||| |||||||||||||||||||| || || || | |||||| |||| || || ||||| ||||| ||||| |||||||||||||| || ||| ||| |
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| T |
40672148 |
tcaacggcattaggtattacaaaaactttatctggtggcaaacctgaccgtaacactgtgttttccttgcttgtgtgagaaacacatatggcttgagtca |
40672247 |
T |
|
| Q |
168 |
catctgccaaggtaaactgcaaaaccttgttcatgtgtatacttccagcatcactaaaaccattcaaggaatgatcggtaaacacaaccttgtatcccat |
267 |
Q |
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|||||||||||||||||||||| |||||||||||||| || |||||||||||| |||||| | || |||||||| ||||||||||||||||||||||| |
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| T |
40672248 |
catctgccaaggtaaactgcaacaccttgttcatgtgaatgcttccagcatcagcaaaaccgtacagagaatgatctgtaaacacaaccttgtatcccat |
40672347 |
T |
|
| Q |
268 |
gattctagcatgcataagggcctcatgacaaagtgttgaaaaggtttgatgtccatgcgcaacggtaattctttctcgagtgagaatagttcttataatt |
367 |
Q |
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| |||| |||||||| || | |||||||||| ||| ||||||| ||| ||||||||| | || ||||||||||||||| | ||||| |||||||||||| |
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| T |
40672348 |
ggttcttgcatgcatgagagtttcatgacaaaatgtcgaaaaggcttggtgtccatgcaccactgtaattctttctcgaataagaatcgttcttataatt |
40672447 |
T |
|
| Q |
368 |
gggagtgttccatgcaaagttggaaatgtgttctgattaaagaatggtctccatggaacatagtagatttttaaaccacctgtcatgtatctaaccccag |
467 |
Q |
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| T |
40672448 |
ggtaataacccatagatggttggaaacgtattctgcataacaaatggtctccatggaacatagtatactttcagaccaccagtcatatatctgaccccag |
40672547 |
T |
|
| Q |
468 |
agcgttttccataagcatgagttacaaccaccacctga |
505 |
Q |
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| || |||||||||||||||||| |||||||||||||| |
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| T |
40672548 |
atcgatttccataagcatgagttgcaaccaccacctga |
40672585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 295 - 509
Target Start/End: Complemental strand, 20685601 - 20685387
Alignment:
| Q |
295 |
acaaagtgttgaaaaggtttgatgtccatgcgcaacggtaattctttctcgagtgagaatagttcttataattgggagtgttccatgcaaagttggaaat |
394 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
20685601 |
acaaagtgttgaaaaggtttgatgtccatgcacaacggtaattctttctcgagtgaaaatagttcttataattgggagtgttccatataaagttggaaat |
20685502 |
T |
|
| Q |
395 |
gtgttctgattaaagaatggtctccatggaacatagtagatttttaaaccacctgtcatgtatctaaccccagagcgttttccataagcatgagttacaa |
494 |
Q |
| |
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|| ||| ||||||||||||||||| |||||||| ||| | ||| |||||| | ||||||| |||||||||||||| ||||||||||||||| ||||||| |
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| T |
20685501 |
gtattcatattaaagaatggtctccgtggaacatggtacactttcaaaccatccgtcatgtgtctaaccccagagcattttccataagcatgggttacaa |
20685402 |
T |
|
| Q |
495 |
ccaccacctgatcat |
509 |
Q |
| |
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||||||||||||||| |
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| T |
20685401 |
ccaccacctgatcat |
20685387 |
T |
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Back To:
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