View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12822_low_4 (Length: 460)
Name: NF12822_low_4
Description: NF12822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12822_low_4 |
 | |
|
| [»] scaffold0305 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Complemental strand, 37924535 - 37924108
Alignment:
| Q |
19 |
tgagagcataaggcaattggatgaatatttggagtcttcgaatccctcaaaaagtaaaggtgttcttatggagagcggcaaggggatgtctaccagcgaa |
118 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37924535 |
tgagagcagaaggcaatttgatgaatatttggagtcttcgagtcctgcaaaaagtaaaggtgttcttatggagagcggcaaggggatgtctaccaacgaa |
37924436 |
T |
|
| Q |
119 |
acacaagcttcaaacccgcagtgtacatgtttgtgatagatgcgtgcagtgtgagagctcctatgagaatgactggcatgtcttctttggatgtgcaaaa |
218 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37924435 |
acacaggcttcaaacccgtagtgtacatgtttgtgatagatgcgtgcagtgtgagagctcctatgagaatgactggtatgtcttctttggatgtgcaaaa |
37924336 |
T |
|
| Q |
219 |
ctagaggaggtgtggagtgcagcagatctatggcacattatacaagacaacttggaaacggtggatggttttgtagcccttttcttcaagttactagaat |
318 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
37924335 |
ctagaggaggtgcggagtgcagcagatctatggcacattatacaagacaacttggaaacggcggatgattttgtagctcttttcttcaagttactagaat |
37924236 |
T |
|
| Q |
319 |
ctctacatcaccaacaactctttgattttgtaatgaccctttggtgcatctggaaacggagaaatgacaagttgtggaacgacgttgaaacacaaccacg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
37924235 |
ctctacatcaccaacaactctttgattttgtaatgaccctttggtgcatctggaaacggagaaataacaagttgtggaacgacgtcgaaacacaaccacg |
37924136 |
T |
|
| Q |
419 |
tatctcggtgaatatggcacatgatgtc |
446 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
37924135 |
tatcttggtgaatatggcacatgatgtc |
37924108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 274
Target Start/End: Original strand, 37871411 - 37871504
Alignment:
| Q |
180 |
tatgagaatgactggcatgtcttctttggatgtgcaaaactagaggaggtgtggagtgcagcagatctatggcacattatacaagacaacttgga |
274 |
Q |
| |
|
|||||||| | ||| |||||||| || |||||||||||| ||||| | || ||||||||||||| ||||||||| |||| |||||| || ||||| |
|
|
| T |
37871411 |
tatgagaacggctgacatgtctttttcggatgtgcaaaattagagcaagtttggagtgcagcaggtctatggca-attaaacaagagaatttgga |
37871504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 16 - 424
Target Start/End: Complemental strand, 29469275 - 29468866
Alignment:
| Q |
16 |
agctgagagcataaggcaattggatgaatatttggagtcttcgaatccctcaaaaag-taaaggtgttcttatggagagcggcaaggggatgtctaccag |
114 |
Q |
| |
|
|||||||| || ||||| | |||||||| |||||||| |||||||||| |||||| |||||||||||||||||||||| | || | | | |||| | |
|
|
| T |
29469275 |
agctgagatcaaaaggcgactggatgaaaatttggagacttcgaatcctacaaaaaaataaaggtgttcttatggagagcagaaaagacgtatttacccg |
29469176 |
T |
|
| Q |
115 |
cgaaacacaagcttcaaacccgcagtgtacatgtttgtgatagatgcgtgcagtgtgagagctcctatgagaatgactggcatgtcttctttggatgtgc |
214 |
Q |
| |
|
||| |||| |||| |||| ||| |||||||| ||||||| | |||| || ||||| ||||| ||||||||||| || |||||||| || |||||||| |
|
|
| T |
29469175 |
cgagacacgggctttaaactcgcggtgtacattgttgtgattgttgcgagccttgtgaaagctcatatgagaatgaatgacatgtctttttcggatgtgc |
29469076 |
T |
|
| Q |
215 |
aaaactagaggaggtgtggagtgcagcagatctatggcacattatacaagacaacttggaaacggtggatggttttgtagcccttttcttcaagttacta |
314 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||||| | |||||||||||||||||||||| ||| ||||||||||||| |||| ||| ||||| || |
|
|
| T |
29469075 |
aaaactagaggaggtgtgaagtgtagcaggtctatagaacattatacaagacaacttggatacgacatatggttttgtagcactttactttcagttagta |
29468976 |
T |
|
| Q |
315 |
gaatctctacatcaccaacaactctttgattttgtaatgaccctttggtgcatctggaaacggagaaatgacaagttgtggaacgacgttgaaacacaac |
414 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| |||||||||| |||||||||||||| ||| |||||||||||||| ||||| |||| ||||| |
|
|
| T |
29468975 |
gaatctctacaacaccaacaactctttgatttcgtactgaccctttgatgcatctggaaacgacaaaacgacaagttgtggaatgacgtcgaaatacaac |
29468876 |
T |
|
| Q |
415 |
cacgtatctc |
424 |
Q |
| |
|
|| ||||||| |
|
|
| T |
29468875 |
catgtatctc |
29468866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 38 - 423
Target Start/End: Complemental strand, 40731283 - 40730898
Alignment:
| Q |
38 |
gatgaatatttggagtcttcgaatccctcaaaaa-gtaaaggtgttcttatggagagcggcaaggggatgtctaccagcgaaacacaagcttcaaacccg |
136 |
Q |
| |
|
|||||| |||||||| |||||||| | |||||| ||||| |||||||||||||| | |||| |||||||||||| || |||| |||| |||| | |
|
|
| T |
40731283 |
gatgaaaatttggagatttcgaatctcgcaaaaaagtaaatgtgttcttatggagggtagcaaagggatgtctacccatgagacacgtgctttaaacatg |
40731184 |
T |
|
| Q |
137 |
cagtgtacatgtttgtgatagatgcgtgcagtgtgagagctcctatgagaatgactggcatgtcttctttggatgtgcaaaactagaggaggtgtggagt |
236 |
Q |
| |
|
|||||||| ||||||| | |||||||| | ||| || || ||||| ||||||| ||||| || |||| | |||||||||||| |||||||||||| |
|
|
| T |
40731183 |
tggtgtacattgttgtgatcgttgcgtgcactctgatagttcatatgaaaatgacttacatgtattttttgaacatgcaaaactagatgaggtgtggagt |
40731084 |
T |
|
| Q |
237 |
gcagcagatctatggcacattatacaagacaacttggaaacggtggatggttttgtagcccttttcttcaagttactagaatctctacatcaccaacaac |
336 |
Q |
| |
|
||||||| | |||| |||||||||||| |||| |||| | | ||||||||||||| |||| || |||||||||||||||| | |||||||||| |
|
|
| T |
40731083 |
gcagcaggtatatgacacattatacaaaacaatatggatatgaatgatggttttgtagtt-ttttgtttttgttactagaatctctataacaccaacaac |
40730985 |
T |
|
| Q |
337 |
tctttgattttgtaatgaccctttggtgcatctggaaacggagaaatgacaagttgtggaacgacgttgaaacacaaccacgtatct |
423 |
Q |
| |
|
| ||||||| ||||||||||||||||||| ||||||| |||| |||| ||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
40730984 |
ttcttgatttcataatgaccctttggtgcatatggaaacaacgaaacgacatgttttggaacgacgtcgaaacacaaccgcgtatct |
40730898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 272 - 436
Target Start/End: Original strand, 4430216 - 4430379
Alignment:
| Q |
272 |
ggaaacggtggatggttttgtagcccttttcttcaagttactagaatctctacatcaccaacaactctttgattttgtaatgaccctttggtgcatctgg |
371 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||| ||||||| ||||| |||| |||||||||||||||||||| ||||||| |||||||||||| ||| |
|
|
| T |
4430216 |
ggaaacggtggatggttttctagctcttttcttcc-gttactataatctttacaacaccaacaactctttgatttcgtaatgatcctttggtgcatatgg |
4430314 |
T |
|
| Q |
372 |
aaacggagaaatgacaagttgtggaacgacgttgaaacacaaccacgtatctcggtgaatatggc |
436 |
Q |
| |
|
|||||| |||| || |||| |||||| |||| |||||| |||| ||||| || ||||||||||| |
|
|
| T |
4430315 |
aaacggcgaaacaacgagttatggaacaacgtcgaaacataaccgcgtatatcagtgaatatggc |
4430379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 168 - 427
Target Start/End: Original strand, 14344935 - 14345194
Alignment:
| Q |
168 |
tgtgagagctcctatgagaatgactggcatgtcttctttggatgtgcaaaactagaggaggtgtggagtgcagcagatctatggcacattatacaagaca |
267 |
Q |
| |
|
|||||||| || ||||| || ||||| ||| |||| || ||||||||||| ||||| | || ||||||||| || ||||||||| ||||||||||| | |
|
|
| T |
14344935 |
tgtgagagatcatatgaaaacgactgccatttctttttatgatgtgcaaaattagagaaagtttggagtgcaacatgtctatggcatattatacaagaga |
14345034 |
T |
|
| Q |
268 |
acttggaaacggtggatggttttgtagcccttttcttcaagttactagaatctctacatcaccaacaactctttgattttgtaatgaccctttggtgcat |
367 |
Q |
| |
|
| |||||||| | ||| ||||||||| | ||||| | ||| ||||| | |||||||| ||||||| |||||||||||||||| |||||||| || |
|
|
| T |
14345035 |
atttggaaactgcggaatgttttgtagatttattctttcacttattagaacccctacatcataaacaacttattgattttgtaatgactctttggtgtat |
14345134 |
T |
|
| Q |
368 |
ctggaaacggagaaatgacaagttgtggaacgacgttgaaacacaaccacgtatctcggt |
427 |
Q |
| |
|
|||||| | | ||||||||| || || || |||||| ||||||| || || |||||||| |
|
|
| T |
14345135 |
ctggaagagcaaaaatgacaaattatgaaatgacgttaaaacacagccgcgcatctcggt |
14345194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 39 - 304
Target Start/End: Complemental strand, 19320 - 19054
Alignment:
| Q |
39 |
atgaatatttggagtcttcgaatccctcaaaaagtaaaggtgttcttatggagagcggcaaggggatgtctaccagcgaaacacaagcttcaaacccgca |
138 |
Q |
| |
|
||||| |||||||| |||| ||| || ||||||||||||| || || ||||| || | | ||| | |||||| ||| ||| ||||||||||| | || |
|
|
| T |
19320 |
atgaaaatttggagacttcaaattccagaaaaagtaaaggtatttttttggagggcaactataggaagcctaccaacgagacataagcttcaaactcaca |
19221 |
T |
|
| Q |
139 |
gtgtacatgtttgtgatagatgcgtgcagtgtgagagctcctatgagaatgactggcatgtcttctttg-gatgtgcaaaactagaggaggtgtggagtg |
237 |
Q |
| |
|
|||| ||| | ||||| |||| ||||| ||||||||||| |||||||| ||||| ||||| || ||| ||||||| ||| | || | || ||||||| |
|
|
| T |
19220 |
gtgtccattgtagtgatcgatgtgtgcactgtgagagctcatatgagaacgactgacatgtgttttttctgatgtgcgaaatttgaacaagtttggagtg |
19121 |
T |
|
| Q |
238 |
cagcagatctatggcacattatacaagacaacttggaaacggtggatggttttgtagcccttttctt |
304 |
Q |
| |
|
|||||| ||||||||| ||||||||||| || |||||||| ||||| ||||||||| || ||||| |
|
|
| T |
19120 |
cagcaggtctatggcatattatacaagagaatttggaaactacggatgattttgtagctctattctt |
19054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University