View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12822_low_5 (Length: 440)
Name: NF12822_low_5
Description: NF12822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12822_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 20 - 432
Target Start/End: Complemental strand, 49698858 - 49698446
Alignment:
| Q |
20 |
gtagcgacggtcattgggggagatggttcttcgacggagtttggttcttttggctccgaaatcgcctagaggcggaagtggagctccgccggtgaggctg |
119 |
Q |
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| T |
49698858 |
gtagcgacggtcattgggggagatggttcttcgacggagtttggttcttttggctccgaaatcgcctagaggcggaagtggagctccgccagtgaggctg |
49698759 |
T |
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| Q |
120 |
tacatgctgccatcatcgtgttccgggagaattccatctccattatgattttccatcatgttcatatttctctcatgatctaaggcatcatcatcgttgt |
219 |
Q |
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| T |
49698758 |
tacatgctgccatcatcgtgttccgggagaattccatctccattatgattttccatcatgttcatatttctctcatgatctaaggcatcatcatcgttgt |
49698659 |
T |
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| Q |
220 |
ggctttcatacatcatttttgcacaccgtagagattagtaacaatgtttcaatgaaatttcttaatgtcacgattgtacgtctacggtttttatgaagct |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49698658 |
ggctttcatacatcatttttgcacaccgtagagattagtaacaatgtttcaatgaaatttcttaatgtcacgattgtacgtctacggtttttatgaagct |
49698559 |
T |
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| Q |
320 |
agctaactttgttcaatcattatatgattaatcaccatgcaacactagcttctttattaattctctggagatggaatttgtgtggtattgtatggtgtta |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49698558 |
agctaactttgttcaatcattatatgattaatcaccatgcaacaccagcttctttattaattctctggagatggaatttgtgtggtattgtatggtgtta |
49698459 |
T |
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| Q |
420 |
attgcttcttctc |
432 |
Q |
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| T |
49698458 |
attgcttcttctc |
49698446 |
T |
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