View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12822_low_8 (Length: 429)
Name: NF12822_low_8
Description: NF12822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12822_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 8 - 413
Target Start/End: Complemental strand, 42095828 - 42095419
Alignment:
| Q |
8 |
aagcaaagggaatatagtgctgtgcaagattgcaaagcaaacatggatagtagcgtggaccgtcttaacaaatcggttaaggagctaggacttttgggta |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42095828 |
aagccaagggaatatagtgctgtgcaagattgcaaagcaaacatggatagtagcgtggaccgtcttaacaaatcggttaaggagctaggacttttgggta |
42095729 |
T |
|
| Q |
108 |
aggctaagagagaggatttggtttggcatataagtaatgttcaaacttgggttagtgctgctcttactgatcagaacacttgtgttgacaacttttctag |
207 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42095728 |
aggctaagggagaggatttggtttggcatataaataatgttcaaacttgggttagtgctgctcttactgatcagaacacttgtgttgacaacttttctag |
42095629 |
T |
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| Q |
208 |
tcctcatatggatcaaaatttgaaggctgcaattggtgctaaggttgttggtgtttctcaagttactagtaatgcacttgccttggttaataactttgcc |
307 |
Q |
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| T |
42095628 |
tcctcatatggatcaaaatttgaaggctgcaattggtgctaaggttgttggtgtttctcaagttactagtaatgcacttgccttggttaataactttgcc |
42095529 |
T |
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| Q |
308 |
tccaagcatcgttaactatgtac----atacttgtgaaaagtgacataagccgtatgatagtttgttgtttaatttgttcaattttatgttcatggtttg |
403 |
Q |
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||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42095528 |
tccaagcatcgttaactatttacatatatacttgtgaaaagtgacataagccgtatgatagtttgttgtttaatttgttcaattttatgttcatggtttg |
42095429 |
T |
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| Q |
404 |
tatccccttt |
413 |
Q |
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|||||||||| |
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| T |
42095428 |
tatccccttt |
42095419 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 1665281 - 1665249
Alignment:
| Q |
130 |
ttggcatataagtaatgttcaaacttgggttag |
162 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
1665281 |
ttggcatataagtaatgttcaaacatgggttag |
1665249 |
T |
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