View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12822_low_9 (Length: 422)
Name: NF12822_low_9
Description: NF12822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12822_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 12 - 407
Target Start/End: Complemental strand, 25253310 - 25252915
Alignment:
| Q |
12 |
ataggtgaaaaaagggtgaaaaacaaaacagagaatgtgtccatcaaattcagattgaatatt-aattaaactcagcgatctgtaagtaaagatgacaca |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25253310 |
ataggtgaaaaaagggtgaaaaacaaaacagagaatgtgtccatcaaattcagattgaatattgaattaaactcagcgatctgtaagtaaagatgacaca |
25253211 |
T |
|
| Q |
111 |
ataataccttcatgcataaataaatacaaaaggaggatgagtgctccaacagacagaattatatcccacattcgctctatgaaatttctaccaaaaattt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
25253210 |
ataataccttcatgcataaataaatacaaaaggaggatgagtgctccaacagacagaattata-cccacattcgctctatgaaatttctaccataaattt |
25253112 |
T |
|
| Q |
211 |
tagtggccatactaataggagcactttcagttccaaggctatcttcctctctcgctgagttagaaatacctgaaatgcaagggaagaaatgtttaaagag |
310 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25253111 |
tagtggccatactaataggagcactttcagctccaaggctatcttcctctctcgctgagttagaaatacctgaaatgcaagggaagaaatgtttaaagag |
25253012 |
T |
|
| Q |
311 |
ctgattgaaaaagaagaataataaaaaatttcggcaagttcactattgctattccaagttttgaattatgtttctgcatactccagcatagatatat |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
25253011 |
ctgattgaaaaagaagaataataaaaaatttcggcaagttcactattgctattccaagttttgaattctgtttctgcatactccaacatagatatat |
25252915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 12 - 407
Target Start/End: Complemental strand, 48140671 - 48140276
Alignment:
| Q |
12 |
ataggtgaaaaaagggtgaaaaacaaaacagagaatgtgtccatcaaattcagattgaatatt-aattaaactcagcgatctgtaagtaaagatgacaca |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48140671 |
ataggtgaaaaaagggtgaaaaacaaaacagagaatgtgtccatcaaattcagattgaatattgaattaaactcagcgatctgtaagtaaagatgacaca |
48140572 |
T |
|
| Q |
111 |
ataataccttcatgcataaataaatacaaaaggaggatgagtgctccaacagacagaattatatcccacattcgctctatgaaatttctaccaaaaattt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
48140571 |
ataataccttcatgcataaataaatacaaaaggaggatgagtgctccaacagacagaattata-cccacattcgctctatgaaatttctaccataaattt |
48140473 |
T |
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| Q |
211 |
tagtggccatactaataggagcactttcagttccaaggctatcttcctctctcgctgagttagaaatacctgaaatgcaagggaagaaatgtttaaagag |
310 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48140472 |
tagtggccatactaataggagcactttcagctccaaggctatcttcctctctcgctgagttagaaatacctgaaatgcaagggaagaaatgtttaaagag |
48140373 |
T |
|
| Q |
311 |
ctgattgaaaaagaagaataataaaaaatttcggcaagttcactattgctattccaagttttgaattatgtttctgcatactccagcatagatatat |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
48140372 |
ctgattgaaaaagaagaataataaaaaatttcggcaagttcactattgctattccaagttttgaattctgtttctgcatactccaacatagatatat |
48140276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 32012025 - 32011946
Alignment:
| Q |
19 |
aaaaaagggtgaaaaacaaaacagagaatgtgtccatcaaattcagattgaatatt-aattaaactcagcgatctgtaagt |
98 |
Q |
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|||||||||||||||||||||||||| ||||| |||||| |||||||||||||| |||||||||||||||| ||||||| |
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| T |
32012025 |
aaaaaagggtgaaaaacaaaacagag-atgtgcaaatcaaactcagattgaatattgaattaaactcagcgatttgtaagt |
32011946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 31791628 - 31791560
Alignment:
| Q |
19 |
aaaaaagggtgaaaaacaaaacagagaatgtgtccatcaaattcagattgaatatt-aattaaactcag |
86 |
Q |
| |
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|||||||||||||||||||||||||||||| | |||||||||||||||| |||| |||||| ||||| |
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| T |
31791628 |
aaaaaagggtgaaaaacaaaacagagaatgagcgaatcaaattcagattgactattgaattaagctcag |
31791560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 374
Target Start/End: Complemental strand, 32033650 - 32033581
Alignment:
| Q |
305 |
aaagagctgattgaaaaagaagaataataaaaaatttcggcaagttcactattgctattccaagttttga |
374 |
Q |
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|||||||||||||||||||||| | ||||| |||||||| ||||| ||| ||| | || ||||||||||| |
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| T |
32033650 |
aaagagctgattgaaaaagaagtagaataacaaatttcgacaagtgcacaattacaatgccaagttttga |
32033581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 32023578 - 32023530
Alignment:
| Q |
19 |
aaaaaagggtgaaaaacaaaacagagaatgtgtccatcaaattcagatt |
67 |
Q |
| |
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||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
32023578 |
aaaaaagggtgaataacaaaacagagaatgtgcaaatcaaattcagatt |
32023530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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