View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12823_low_1 (Length: 580)
Name: NF12823_low_1
Description: NF12823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12823_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 18 - 572
Target Start/End: Original strand, 35398328 - 35398887
Alignment:
| Q |
18 |
gttataaaggcatgaattgcgactttcactttgcaaagtatattttaaagaatgcaaaagaattgcagaccatgacaatcaatgcctctcctgtggatat |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35398328 |
gttataaaggcatgaattgcgactttcactttgcaaagtatattttaaagaatgcaaaagaattgcagaccatgacaatcaatgcctctcctgtggatat |
35398427 |
T |
|
| Q |
118 |
aaatataaagctccaaatgctaatcaagttatctttgt-----gtccaaggggctcaactacatataaaatttcatttcattgattaaggttagggcatg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35398428 |
aaatataaagctccaaatgctaatcaagttatctttgtgttgtgtccaaggggatcaactacatgtaaaatttcatttcattgattaaggttagggcatg |
35398527 |
T |
|
| Q |
213 |
cttattttagtttctacttcctaccaccataatagcattggatgttttgaaatacatgaactatgtatcattacgtcctttattttagatattttgattc |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35398528 |
cttattttagtttctacttcctaccaccataatagcattggatgttttgaaatacatgaactatgtatcattacgtcctttattttagatattttgattc |
35398627 |
T |
|
| Q |
313 |
tatctccttccaacctttgtgaaatttcttttctttccgacaagtaacagctgtttctgttttgaattacaatgatgtttattactctttggaagttgtt |
412 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35398628 |
tatctccttccaacctttgtgaaatttcttttctttccgacaagtaacagttgtttctgttttgaattacaatgatgtttattactctttggaagttgtt |
35398727 |
T |
|
| Q |
413 |
cactaaatatcgatacgatgcataactgtgatgcacaaaggttgtaaattctgatttttgtcaattatgttttttctctatcccacacaagtgcataggc |
512 |
Q |
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| T |
35398728 |
cactaaatatcgatacgatgcataactgtgatgcacaaaggttgtaaattctgatttttgtcaattatgttttttctctatcccacacaagggcataggc |
35398827 |
T |
|
| Q |
513 |
tgtgctttgaatgcatgacaatagattaaataactagttctacttctatggctctctgct |
572 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
35398828 |
tgtgctttgaatgcatgacaatagattaaataactagttctacttctatggctctttgct |
35398887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 11375253 - 11375626
Alignment:
| Q |
18 |
gttataaaggcatgaattgcgactttcactttgcaaagtatattttaaagaatgcaaaagaattgcagaccatgacaatcaatgcctctcctgtggatat |
117 |
Q |
| |
|
|||||| |||| |||| ||||||||||| ||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| || ||||||| |
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| T |
11375253 |
gttatagaggcgtgaactgcgactttcagtttgcaaagtatattttgaagaatgcaaaagtattgcagatcatgacaatcaatgcctcttctatggatat |
11375352 |
T |
|
| Q |
118 |
aaatataaagctccaaatgctaatcaagttatctttgtgtccaaggggctcaactacatataaaatttcatttcattgattaaggttagggcatgcttat |
217 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||| |||||| |||||||||| |||||||||||| ||||| |||||||| |||||| |||| |
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| T |
11375353 |
aaatataaagcaccaaattctaatcaagttatctttgtgtcaaaggggatcaactacatgtaaaatttcattcgattgagtaaggttatggcatgtttat |
11375452 |
T |
|
| Q |
218 |
tttagtttctacttcctaccaccataatagcattggatgttttgaaatacatgaactatgtatcattacgtcctttattttagatattttgattctatct |
317 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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|
| T |
11375453 |
tttagtttctacttcct---accattatagcattagatgttttgaaatacatgaactatgtatcattacgtcctttatgttagatattttgactctatct |
11375549 |
T |
|
| Q |
318 |
ccttcc-aacctttgtgaaatttcttttctttccgacaagtaacagctgtttctgttttgaattacaatgatgtttat |
394 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| |||||||||| |||||| || ||||||||| | |||||||||| |
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|
| T |
11375550 |
ccttccaaacctttgtgaaatttctttcctttctaacaagtaacaactgtttttg-tttgaattatattgatgtttat |
11375626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 11378429 - 11378702
Alignment:
| Q |
18 |
gttataaaggcatgaattgcgactttcactttgcaaagtatattttaaagaatgcaaaagaattgcagaccatgacaatcaatgcctctcctgtggatat |
117 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
11378429 |
gttataaaggcatgaattgtgactttcagtttgcaaaatatattttgaagaatgcaaaagtattgcagacaatgacaatcaatgcctctcctgtggatat |
11378528 |
T |
|
| Q |
118 |
aaatataaagctccaaatgctaatcaagttatctttgtgtccaaggggctcaactacatataaaatttcatttcattgattaaggttagggcatgcttat |
217 |
Q |
| |
|
||| ||||||| |||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||||||| |||| |
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|
| T |
11378529 |
aaacataaagcaccaaattctaatcaagttaactttgtgtccaaggggctcaactacatgtaaaatttcatttgattaagtaaggttagggcatgtttat |
11378628 |
T |
|
| Q |
218 |
tttagtttctacttcctaccaccataatagcattggatgttttgaaatacatgaactatgtatcattacgtcctttat |
295 |
Q |
| |
|
||||||||||||||||| |||||| ||||| |||||||| ||||||||||||||||||||||||||| ||| |||| |
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|
| T |
11378629 |
tttagtttctacttcct---accatattagca-tggatgttctgaaatacatgaactatgtatcattacatccattat |
11378702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 212
Target Start/End: Original strand, 12647326 - 12647488
Alignment:
| Q |
50 |
gcaaagtatattttaaagaatgcaaaagaattgcagaccatgacaatcaatgcctctcctgtggatataaatataaagctccaaatgctaatcaagttat |
149 |
Q |
| |
|
|||||||||||| | ||||||||||||| | ||| ||||||||||| | |||||| || |||||||| |||||||||| ||||||| |||| || |||| |
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|
| T |
12647326 |
gcaaagtatattattaagaatgcaaaagtaatgcgcaccatgacaataattgcctcgccggtggatatgaatataaagcaccaaatgataatgaaattat |
12647425 |
T |
|
| Q |
150 |
ctttgtgtccaaggggctcaactacatataaaatttcatttcattgattaaggttagggcatg |
212 |
Q |
| |
|
||| ||||||| |||||| |||| | ||| |||||||| |||||| ||||||||| |||| |
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|
| T |
12647426 |
cttcatgtccaaagggctctgctacgtgcaaattttcattttattgataaaggttaggtcatg |
12647488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 12652667 - 12652817
Alignment:
| Q |
18 |
gttataaaggcatgaattgcgactttcactttgcaaagtatattttaaagaatgcaaaagaattgcagaccatgacaatcaatgcctctcctgtggatat |
117 |
Q |
| |
|
|||||||||| ||||| | ||| ||||| |||||| |||| ||||| ||||||||||||| | | || ||||||||||||| ||| || || || ||||| |
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|
| T |
12652667 |
gttataaaggtatgaagtccgagtttcagtttgcagagtacattttgaagaatgcaaaagtactccacaccatgacaatcactgcttcaccagttgatat |
12652766 |
T |
|
| Q |
118 |
aaatataaagctccaaatgctaatcaagttatctttgtgtccaaggggctc |
168 |
Q |
| |
|
|||||||||| ||||||||| | ||||||| | |||||| |||||||| |
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|
| T |
12652767 |
caatataaagcaccaaatgcttacgaagttatatctgtgtcttaggggctc |
12652817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 12486797 - 12486963
Alignment:
| Q |
23 |
aaaggcatgaattgcgactttcactttgcaaagtatattttaaagaatgcaaaagaattgcagaccatgacaatcaatgcctctcctgtggatataaata |
122 |
Q |
| |
|
||||||||||| || || |||| |||||| ||||| |||| |||||||| || | ||| || |||||||| | ||||||||| | |||| ||| | |
|
|
| T |
12486797 |
aaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaatgccaacttactgcgcacgatgacaattagtgcctctccaggggatttaactt |
12486896 |
T |
|
| Q |
123 |
taaagctccaaatgctaatcaagttatctttgtgtccaaggggctcaactacatataaaatttcatt |
189 |
Q |
| |
|
|||||| |||||||||||| | ||||||||||||||||||||||| | | ||| |||| ||||||| |
|
|
| T |
12486897 |
taaagcaccaaatgctaatggatttatctttgtgtccaaggggctctattgcatgtaaactttcatt |
12486963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 12540957 - 12541123
Alignment:
| Q |
23 |
aaaggcatgaattgcgactttcactttgcaaagtatattttaaagaatgcaaaagaattgcagaccatgacaatcaatgcctctcctgtggatataaata |
122 |
Q |
| |
|
||||||||||| || || |||| |||||| ||||| |||| |||||||| || | ||| || |||||||| | ||||||||| | |||| ||| | |
|
|
| T |
12540957 |
aaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaatgccaacttactgcgcacgatgacaattagtgcctctccaggggatttaactt |
12541056 |
T |
|
| Q |
123 |
taaagctccaaatgctaatcaagttatctttgtgtccaaggggctcaactacatataaaatttcatt |
189 |
Q |
| |
|
|||||| |||||||||||| | ||||||||||||||||||||||| | | ||| |||| ||||||| |
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|
| T |
12541057 |
taaagcaccaaatgctaatggatttatctttgtgtccaaggggctctattgcatgtaaactttcatt |
12541123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 12508295 - 12508395
Alignment:
| Q |
89 |
atgacaatcaatgcctctcctgtggatataaatataaagctccaaatgctaatcaagttatctttgtgtccaaggggctcaactacatataaaatttcat |
188 |
Q |
| |
|
|||||||| | ||||||||| | |||| ||| | |||||| |||||||||||| | ||||||||||||||||||||||| ||| || |||| |||||| |
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|
| T |
12508295 |
atgacaattagtgcctctccaggggatttaactttaaagcaccaaatgctaatggatttatctttgtgtccaaggggctctactggatgtaaactttcat |
12508394 |
T |
|
| Q |
189 |
t |
189 |
Q |
| |
|
| |
|
|
| T |
12508395 |
t |
12508395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 15329489 - 15329295
Alignment:
| Q |
18 |
gttataaaggcatgaattgcgactttcactttgcaaagtatattttaaagaatgcaaaagaattgcagaccatgacaatcaatgcctctcctgtggatat |
117 |
Q |
| |
|
|||||||||||||||| || || |||| |||| | ||||||| || ||||| ||||||| |||||| ||||||| ||| |||||||||| |||||||| |
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|
| T |
15329489 |
gttataaaggcatgaaatgtgagcttcagtttgtagagtatatattgaagaacgcaaaagtattgcacaccatgaaaattaatgcctctctcgtggatat |
15329390 |
T |
|
| Q |
118 |
aaatataaagctccaaatgctaatcaagttatctttgtgtccaaggggctcaactacatataaaatttcatttcattgattaaggttagggcatg |
212 |
Q |
| |
|
|||||| ||| |||||||||||| || |||||| |||||||||||||||| ||||||| | | |||||||| ||||| |||||||||||||| |
|
|
| T |
15329389 |
aaatatgaagtaccaaatgctaatgaaattatctctgtgtccaaggggctctactacatgtgtactttcatttgattgagcaaggttagggcatg |
15329295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 14987444 - 14987365
Alignment:
| Q |
89 |
atgacaatcaatgcctctcctgtggatataaatataaagctccaaatgctaatcaagttatctttgtgtccaaggggctc |
168 |
Q |
| |
|
|||||||| || |||||| ||| ||| ||| ||||||| |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
14987444 |
atgacaattaacgcctcttctgaagatttaactataaagtaccaaatgctaatggatttatctttgtgtccaaggggctc |
14987365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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