View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12823_low_2 (Length: 436)
Name: NF12823_low_2
Description: NF12823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12823_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 39394778 - 39394353
Alignment:
| Q |
1 |
agattgtccctctccaacacccttttgagtttcctttaccttgatctttggcaactctttctcagttactttcttatcctctaaatctttgattttgttt |
100 |
Q |
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| T |
39394778 |
agattgtccctctccaacacccttttgagtttcctttaccttgatctttggcaactctttctcagttactttcttatcctctaaatctttgattttgttt |
39394679 |
T |
|
| Q |
101 |
tcgcctaattgaagtgtctttaannnnnnn-caagagaaccaatttcaagccttgactcttcaagtaaaaccttattatgttctagctgttttgtttgca |
199 |
Q |
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| T |
39394678 |
tcgcctaattgaagtgtctttaatttttcttcaagagaaccaatttcaagctttgactcttcaagtaaaaccttattatgttctagctgttttgtttgca |
39394579 |
T |
|
| Q |
200 |
tcaccaatgtatcaaacaaattggcttctgattcttttcttttttccaattctgcctctgattcttgaagtttcctcttgtactcagacaacaaatcatc |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39394578 |
tcaccaatgtatcaaacaaattggcttctgattcttttcttttttccaattctgcctctgattcttgaagtttcctcttgtactcagacaacaaaacatc |
39394479 |
T |
|
| Q |
300 |
tttctccgacaattgttgttcatgttttaatgatatttcactatggttgttttttggttctgaaaccttctttgcggcaattacttcatcaatcatgtca |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39394478 |
tttctccgacaattgttgttcatgttttaatgatatttcactatggttgttttttggttctgaaaccttctttgcggcaattacttcatcaatcatgtca |
39394379 |
T |
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| Q |
400 |
ttggttttctctgctacctttttcat |
425 |
Q |
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||||||||||| |||||||||||||| |
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| T |
39394378 |
ttggttttctcagctacctttttcat |
39394353 |
T |
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