View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12823_low_3 (Length: 419)
Name: NF12823_low_3
Description: NF12823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12823_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 9 - 401
Target Start/End: Complemental strand, 15381809 - 15381406
Alignment:
| Q |
9 |
agcagagactgtcggaaatttcagggggcaagtgatgtagtataaggatataatagaacagcctggagatggtcacgagcaggaactggttatttgaaga |
108 |
Q |
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| T |
15381809 |
agcagagactgtcggaaatttcagggggcaagtgatgtagtataaggatataatagaacagcctggagatggtcacgagcaggaactggttatttgaaga |
15381710 |
T |
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| Q |
109 |
gtcatagtcaatgataattgatagtaccttctttattgttggagggaccaaggagtgcatcaacttaacagttatgcctcactacactccagaatatata |
208 |
Q |
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| T |
15381709 |
gtcatagtcaatgataattgatagtaccttctttattgctggagggaccaaggagtgcatcaacttaacagttatgcctcactacactcctgaatatata |
15381610 |
T |
|
| Q |
209 |
tggccttaaaagtttattttcaattcagtataagaaaaacaaatgaaaaatctataatgtctggattga-ctataagttcgatagacacat--------- |
298 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
15381609 |
tggcattaaaagtttattttcaattcagtataataaaaacaaatgaaaaatctataatgtttggattgacctataagttcgatagacacattatgttatc |
15381510 |
T |
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| Q |
299 |
-taattaacatcgacaaaagttacgcgttttgatgaattactatttacagtgtaaaagtggtttcatccaactcatcgtgattccaaacatggatgtcgt |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||| | |
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| T |
15381509 |
ataattaacatcgacaaaagttacgcgttttgatgaattactgtttacagtgtaaaagtggtttcatcaaactcatcgtgattttaaacatggatgtcat |
15381410 |
T |
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| Q |
398 |
atct |
401 |
Q |
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|||| |
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| T |
15381409 |
atct |
15381406 |
T |
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