View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12823_low_4 (Length: 386)
Name: NF12823_low_4
Description: NF12823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12823_low_4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 43813325 - 43812957
Alignment:
| Q |
18 |
tcagtcatgtctaaatcatttatagtcatatttgagggaagcttccaagaaaagcaatgtatcaattgagcaacaacaagtttaactgtagctagtccca |
117 |
Q |
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| T |
43813325 |
tcagtcatgtctaaatcatttatagtcatatttgagggaagcttccaagaaaagcaatgtatcaattgagcaacaacaagtttaactgtagctagtccca |
43813226 |
T |
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| Q |
118 |
agtttattccaggacatcctcttcgaccgaaaccaaatggtataaattggaaatcatatccacggtagtcgaagtttttatccacaaatctctctggata |
217 |
Q |
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| T |
43813225 |
agtttattccaggacatcctcttcgaccgaaaccaaatggtataaattggaaatcatgtccacggtagtcgaagtttttatccacaaatctctctggata |
43813126 |
T |
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| Q |
218 |
aaattcttcggcattattagaccatatcttagaatctcttcctattgcccacaaattcacaattactcttgnnnnnnnctttatgaaataaccatgaact |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43813125 |
aaattcttcggcattattagaccatatcttagaatctcttcctattgcccacaaattcacaattactcttgtttttttctttatgaaataaccatgaact |
43813026 |
T |
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| Q |
318 |
gtagcatcctctgttgactcgcgcggcacaagtggtcctgcaggatataatcttaaggtctccatgatc |
386 |
Q |
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| T |
43813025 |
gtagcatcctctgttgactcgcgcggcacaagtggtcctgcaggatataatcttaaggtctccatgatc |
43812957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 43802756 - 43802388
Alignment:
| Q |
18 |
tcagtcatgtctaaatcatttatagtcatatttgagggaagcttccaagaaaagcaatgtatcaattgagcaacaacaagtttaactgtagctagtccca |
117 |
Q |
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| T |
43802756 |
tcagtcatgtctaaatcatttggagtcatattcgagggaagctcccaagtaaagcaatgtaccaattgagcaacaacaagtttaactgtagttagtccca |
43802657 |
T |
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| Q |
118 |
agtttattccaggacatcctcttcgaccgaaaccaaatggtataaattggaaatcatatccacggtagtcgaagtttttatccacaaatctctctggata |
217 |
Q |
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| T |
43802656 |
agtttattccaggacatcctcttcgaccaaaaccaaatggtataaattggaaatcatgtccgcggtagtctaaacttttatccacgaatctctccggaaa |
43802557 |
T |
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| Q |
218 |
aaattcttcggcattattagaccatatcttagaatctcttcctattgcccacaaattcacaattactcttgnnnnnnnctttatgaaataaccatgaact |
317 |
Q |
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| T |
43802556 |
aaattcttcagcattattagaccagatcgcagaatctcttcctattgcccataaattcaaaattattcttgtttttttctttatgaaataaccatgcact |
43802457 |
T |
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| Q |
318 |
gtagcatcctctgttgactcgcgcggcacaagtggtcctgcaggatataatcttaaggtctccatgatc |
386 |
Q |
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| T |
43802456 |
gtagaatcttgtgttgactcgcgtggcacaagtggtcccggagggtataatcttaaggtctccatgatc |
43802388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 268
Target Start/End: Complemental strand, 29995752 - 29995674
Alignment:
| Q |
190 |
agtttttatccacaaatctctctggataaaattcttcggcattattagaccatatcttagaatctcttcctattgccca |
268 |
Q |
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| T |
29995752 |
agtttttctcaataaatctctctggataaaattcttcggcattttctgaccaaacattaggatctctccctattgccca |
29995674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 31890783 - 31890725
Alignment:
| Q |
123 |
attccaggacatcctcttcgaccgaaaccaaatggtataaattggaaatcatatccacg |
181 |
Q |
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| T |
31890783 |
attccaggacaacttcttcgaccaaaaccaaatggtatgagttgaaaatcatgtccacg |
31890725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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