View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12824_high_1 (Length: 416)
Name: NF12824_high_1
Description: NF12824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12824_high_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 34430528 - 34430130
Alignment:
| Q |
18 |
actgacaggaagaatacgcttcatcaatatgacattgacattccctcaccattcagatatacaatgtgcttcatcaataacaacaagtgagacggctaac |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34430528 |
actgacagaaagaatacgcttcatcaatatgacattgacattccctcaccattcagatatacaatgtgcttcatcaataacaacaagtgagacggctaac |
34430429 |
T |
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| Q |
118 |
ccaccagagataacagacagaaattcttcattcaagaatcgctctggtgaaacaaaaagcacctgtatgaattataattgcaatcagtatctttcacgtg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34430428 |
ccaccagagataacagacagaaattcttcattcaagaatcgctctggtgaaacaaaaagcacctgtatgaattataattgcaatcagtatctttcacgtg |
34430329 |
T |
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| Q |
218 |
agagttctaacatcatcgatacagtaaattaacttgcaattcaaatgtgatatgtgaaaatggcttataaataatcaacattcacatgcatgcaatcaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34430328 |
agagttctaacatcatcgatacagtaaattaacttgcaattcaaatgtgatatgtgaaaatggcttataaataatcaacattcacatgcatgcaatcaat |
34430229 |
T |
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| Q |
318 |
cagcaagattgctacatatatctacaaaagaagatccaagccaaagttgaactcagttgtcgaaattctcacctttattgtgccttgacgaagctggtt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34430228 |
cagcaagattgctacatatatctacaaaagaagatccaagccaaagttgaactcagttgtcgaaattctcacctttattgtgccttgacgaagctggtt |
34430130 |
T |
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