View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12824_high_2 (Length: 252)
Name: NF12824_high_2
Description: NF12824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12824_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 22862611 - 22862394
Alignment:
| Q |
19 |
aagaaataatcttcataactaactcccacgccaaaacactccacaccgaccccacacatcctaatcctctgtctccttcctcacctccatccccctcgcc |
118 |
Q |
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|||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||| |||| ||| |||||||||||||| ||||||| || |
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| T |
22862611 |
aagaaacaatcttcataactaactcccacaccaaaacaccccacaccgaccccacacaccctaaacctccgtcatcttcctcacctccaaccccctcccc |
22862512 |
T |
|
| Q |
119 |
tcctcaccaactacaaaacatccacgcacacttcctctagatagtgcctgaaaactatttttacaccgtacaccgatagacttacccacttctaccacgt |
218 |
Q |
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||| |||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22862511 |
tccccaccaactacgaaacctccacgcacacttcctctagatagtgcctgaaaattatttttacaccgtacacctatagacttacccacttctaccacgt |
22862412 |
T |
|
| Q |
219 |
catcctccatcccctttg |
236 |
Q |
| |
|
|||||||||||||||||| |
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| T |
22862411 |
catcctccatcccctttg |
22862394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 47556647 - 47556864
Alignment:
| Q |
19 |
aagaaataatcttcataactaactcccacgccaaaacactccacaccgaccccacacatcctaatcctctgtctccttcctcacctccatccccctcgcc |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| ||||||| ||||||||| ||||| |||||||| ||||||||||||| | || ||||||| |
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| T |
47556647 |
aagaaataatcttcataacttcctcccacaccaaaacaccccacaccagccccacacaccctaaacctctgtcaccttcctcacctctaaccacctcgcc |
47556746 |
T |
|
| Q |
119 |
tcctcaccaactacaaaacatccacgcacacttcctctagatagtgcctgaaaactatttttacaccgtacaccgatagacttacccacttctaccacgt |
218 |
Q |
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|
||| ||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47556747 |
tccccaccatctacgaaacctccacgcacacttcctctagatagtgcctgaaaactatttttacaccgtacaccgatagacttacccacttctaccacgt |
47556846 |
T |
|
| Q |
219 |
catcctccatcccctttg |
236 |
Q |
| |
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||||||||| |||||||| |
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| T |
47556847 |
catcctccaacccctttg |
47556864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 5388389 - 5388172
Alignment:
| Q |
19 |
aagaaataatcttcataactaactcccacgccaaaacactccacaccgaccccacacatcctaatcctctgtctccttcctcacctccatccccctcgcc |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||| ||||| |||| ||||||||||| ||||||| |||||||||| |
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|
| T |
5388389 |
aagaaataatcttcataacaaactcccacaccaaaatactccacaccgaccccacacaccctaaacctccgtctccttccttacctccaaccccctcgcc |
5388290 |
T |
|
| Q |
119 |
tcctcaccaactacaaaacatccacgcacacttcctctagatagtgcctgaaaactatttttacaccgtacaccgatagacttacccacttctaccacgt |
218 |
Q |
| |
|
||| ||||||| ||| | | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| |
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|
| T |
5388289 |
tccccaccaacaacacaccctccacgcacacttcctctagatagtgcctgaaaactattattacaccgtacaccgatcgactttgccacttctaccacgt |
5388190 |
T |
|
| Q |
219 |
catcctccatcccctttg |
236 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
5388189 |
catcctccatcccctttg |
5388172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 10798545 - 10798328
Alignment:
| Q |
19 |
aagaaataatcttcataactaactcccacgccaaaacactccacaccgaccccacacatcctaatcctctgtctccttcctcacctccatccccctcgcc |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| ||||||| ||||||||| ||||| |||| ||| ||||||||||||| | || ||||||| |
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|
| T |
10798545 |
aagaaataatcttcataacttcctcccacaccaaaacaccccacaccagccccacacaccctaaacctccgtcaccttcctcacctctaacctcctcgcc |
10798446 |
T |
|
| Q |
119 |
tcctcaccaactacaaaacatccacgcacacttcctctagatagtgcctgaaaactatttttacaccgtacaccgatagacttacccacttctaccacgt |
218 |
Q |
| |
|
||| ||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10798445 |
tccccaccatctacgaaacctccacgcacacttcctctagatagtgcctgaaaactatttttacaccgtacaccgatagacttacccacttctaccacgt |
10798346 |
T |
|
| Q |
219 |
catcctccatcccctttg |
236 |
Q |
| |
|
||||||||| |||||||| |
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|
| T |
10798345 |
catcctccaacccctttg |
10798328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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