View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12824_low_2 (Length: 349)
Name: NF12824_low_2
Description: NF12824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12824_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 20690997 - 20690714
Alignment:
| Q |
16 |
gtttgttgttttgatttgaaaaaatatacctagtcagttacaatgtgttatggttattgagagattaaannnnnnnattacgctcaagtgctgatttgaa |
115 |
Q |
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| T |
20690997 |
gtttgttgtgttgatttgaaaaaatatacctagtcagttacaatgtcttatggttattgagagattaaaatttttgattacgctcaagtgctgatttgaa |
20690898 |
T |
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| Q |
116 |
gtttttgattatgcacataatttgnnnnnnnnatgaacttaaatgcaagtgtttaggnnnnnnnnnnnnnnnnattatgttgatctgaaacaatgaatct |
215 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20690897 |
gtttttgattatgcacataacttgttttttttatgaacttaaatgcaagtgtttaggttttttgtttttgtttattatgttgatctgaaacaatgaatct |
20690798 |
T |
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| Q |
216 |
agtaagttacaattgtgagttggatttagaggctgaaaattttgattatgctcttgcatttttcttaactccattttaagtgtt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20690797 |
agtaagttacaattgtgagttggatttagaggctgaaaattttgattatgctcttgcatttttcttaactccattttaagtgtt |
20690714 |
T |
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