View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12825_high_1 (Length: 409)

Name: NF12825_high_1
Description: NF12825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12825_high_1
NF12825_high_1
[»] chr4 (16 HSPs)
chr4 (206-409)||(35241357-35241560)
chr4 (207-409)||(35278148-35278351)
chr4 (164-406)||(35283625-35283846)
chr4 (213-407)||(35287195-35287391)
chr4 (248-404)||(35253630-35253786)
chr4 (16-161)||(35283445-35283584)
chr4 (16-157)||(35277934-35278069)
chr4 (209-402)||(35271467-35271666)
chr4 (21-161)||(35241152-35241286)
chr4 (323-400)||(35238385-35238462)
chr4 (207-264)||(35275487-35275544)
chr4 (321-401)||(35247083-35247163)
chr4 (112-161)||(35253480-35253529)
chr4 (95-156)||(35271325-35271386)
chr4 (91-133)||(35275349-35275391)
chr4 (349-402)||(35275605-35275658)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 6e-87; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 206 - 409
Target Start/End: Original strand, 35241357 - 35241560
Alignment:
Q  206 tatatatatcatgaaacatcaaaacataacgaaccaatcatcaagttacaaaggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaag 305  Q
    ||||||||||||||||||||||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35241357 tatatatatcatgaaacatcaaaacataatgaatcaatcctcaagttacaatggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaag 35241456  T
Q  306 agactcacnnnnnnngcatcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtag 405  Q
    ||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35241457 agactcactttttttgcatcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacttctaagatggtag 35241556  T
Q  406 atga 409  Q
    ||||    
T  35241557 atga 35241560  T

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Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 207 - 409
Target Start/End: Original strand, 35278148 - 35278351
Alignment:
Q  207 atatatatcatgaaacatcaaaacataacgaaccaatcatcaagttacaaa-ggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaag 305  Q
    |||| |||||||||||||||||||| ||||||  ||||||||||||||||| |||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  35278148 atatgtatcatgaaacatcaaaacacaacgaattaatcatcaagttacaaaaggaaggactaatgcagcagagtgagtagaatggggtatgaaaagaaag 35278247  T
Q  306 agactcacnnnnnnngcatcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtag 405  Q
    ||||||||       |||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35278248 agactcaccgttttagcatcccagaattttattgttttatcagcagaagatgttgcaaatatagtggatcctggttgaaatctaacatctaagatggtag 35278347  T
Q  406 atga 409  Q
    ||||    
T  35278348 atga 35278351  T

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Target: chr4; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 164 - 406
Target Start/End: Original strand, 35283625 - 35283846
Alignment:
Q  164 ccaacaacattgcacaacactctctcgagcaatacatatacatatatatatcatgaaacatcaaaacataacgaaccaatcatcaagttacaaaggaagg 263  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35283625 ccaacaacattgcacaacactctctcgagcaatacatat--------atatcatgaaacatcaaaacataatgaaccaatcatcaagttacaaaggaagg 35283716  T
Q  264 actaatgcagaagagtgagtagaaggggatatgaaaagaaagagactcacnnnnnnngcatcccataattttactgttttatcagcagaagatgttgcaa 363  Q
    ||||||||||||||||||||||             |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  35283717 actaatgcagaagagtgagtag-------------aagaaagagactcactttttttgcatcccataattttactgttttatcagcagaagatgttgcaa 35283803  T
Q  364 atatagtcgatcctggttgaaatctaacatctaagatggtaga 406  Q
    ||||||| ||||||||||||||||| || || |||||||||||    
T  35283804 atatagttgatcctggttgaaatctcacgtcaaagatggtaga 35283846  T

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Target: chr4; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 213 - 407
Target Start/End: Original strand, 35287195 - 35287391
Alignment:
Q  213 atcatgaaacatcaaaacataacgaaccaatcatcaagttacaaaggaaggactaatgcagaagagtgagtagaagggg-atatgaaaa-gaaagagact 310  Q
    ||||||||||| ||| |||||| | | ||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||    
T  35287195 atcatgaaacagcaagacataaggcatcaatcctcaagttacaaaggaaggactaatgcagaagagtgagtagaagggggatgtgaaaaagaaagagact 35287294  T
Q  311 cacnnnnnnngcatcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggtagat 407  Q
    |||       |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| |||||||||||| ||||| ||||||    
T  35287295 cactttttttgcatcccataattttactgttttatcagcagaggatgttgcaaatatagttgaacctggtttaaatctaacatcgaagatagtagat 35287391  T

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Target: chr4; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 248 - 404
Target Start/End: Original strand, 35253630 - 35253786
Alignment:
Q  248 aagttacaaaggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaagagactcacnnnnnnngcatcccataattttactgttttatca 347  Q
    |||||||| |||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||||       |||||||||||||||||||||||||||    
T  35253630 aagttacataggaaggaataatgcagatgagtgagtagaaggagatgtgaaaagaaagagactcacactgtttgcatcccataattttactgttttatca 35253729  T
Q  348 gcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatggta 404  Q
    |||||||| |||||||| | ||| |||||||||||||||||||| || |||||||||    
T  35253730 gcagaagaggttgcaaacacagttgatcctggttgaaatctaacttcgaagatggta 35253786  T

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Target: chr4; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 35283445 - 35283584
Alignment:
Q  16 acctgtgagtagttgttattcagttttgaatactaaaagacgagtgtaagcctgaccggcaatgagatggacatcatcatgacacgctgattgaggtccc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  || |||   ||      |  | |||||||||||||||||||||||||||    
T  35283445 acctgtgagtagttgttattcagttttgaatactaaaagacgagtgtaaaactcaccataaa------gttcttcatcatgacacgctgattgaggtccc 35283538  T
Q  116 atactttaattacatcacaggtatcagacgagcaaataattcctcc 161  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||    
T  35283539 atactttaattacatcacaggtatcggacgagcaaagaattcctcc 35283584  T

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Target: chr4; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 35277934 - 35278069
Alignment:
Q  16 acctgtgagtagttgttattcagttttgaatactaaaagacgagtgtaagcctgaccggcaatgagatggacatcatcatgacacgctgattgaggtccc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | || |||   ||      || | |||| ||||||||||||||||| ||||    
T  35277934 acctgtgagtagttgttattcagttttgaatactaaaagacgagtgtaggactcaccataaa------ggtcttcattatgacacgctgattgagatccc 35278027  T
Q  116 atactttaattacatcacaggtatcagacgagcaaataattc 157  Q
    |||||||||||| ||||||||||||||||||||||| |||||    
T  35278028 atactttaattaaatcacaggtatcagacgagcaaagaattc 35278069  T

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Target: chr4; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 209 - 402
Target Start/End: Original strand, 35271467 - 35271666
Alignment:
Q  209 atatatcatgaaacatcaaaacataacgaaccaatcatcaagttacaaaggaaggactaatgcagaagagtgagtagaaggggatatgaaaagaaagaga 308  Q
    |||||||||||||||||||||||||| |||  ||||    ||||||||||||| ||||| ||||||||||||||||||||| | || ||||||||||| |    
T  35271467 atatatcatgaaacatcaaaacataatgaattaatccatgagttacaaaggaaagactattgcagaagagtgagtagaaggagctaagaaaagaaagaaa 35271566  T
Q  309 ctcac------nnnnnnngcatcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatgg 402  Q
    || ||             || | ||||| |||||||||| ||||||||||||| |||||||||||||  ||||||| | ||||||| || ||||||||||    
T  35271567 cttactcttgttctttttgcgtgccatagttttactgttctatcagcagaagaagttgcaaatataggtgatcctgatcgaaatctgacttctaagatgg 35271666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 35241152 - 35241286
Alignment:
Q  21 tgagtagttgttattcagttttgaatactaaaagacgagtgtaagcctgaccggcaatgagatggacatcatcatgacacgctgattgaggtcccatact 120  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||| || ||    |||    |||  |  ||| |||||||||||||||| |||||||||    
T  35241152 tgagtagttgtcattcagttttgaatactaaaagatgagtgtaagactcac----aatacagtggtta--atcctgacacgctgattgagatcccatact 35241245  T
Q  121 ttaattacatcacaggtatcagacgagcaaataattcctcc 161  Q
    |||||||||| || |||||| |||||||||| | |||||||    
T  35241246 ttaattacattactggtatcggacgagcaaagagttcctcc 35241286  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 400
Target Start/End: Original strand, 35238385 - 35238462
Alignment:
Q  323 atcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagat 400  Q
    ||||||||||||||||| ||||||||  ||||| |||||||||||| | | |||||||||||||||||| ||| ||||    
T  35238385 atcccataattttactgctttatcagaggaagaagttgcaaatatatttgttcctggttgaaatctaacttctgagat 35238462  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 35275487 - 35275544
Alignment:
Q  207 atatatatcatgaaacatcaaaacataacgaaccaatcatcaagttacaaaggaagga 264  Q
    |||||||| ||||||||||||||||||| |||  |||| |||||||||||||||||||    
T  35275487 atatatatgatgaaacatcaaaacataatgaattaatcctcaagttacaaaggaagga 35275544  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 321 - 401
Target Start/End: Original strand, 35247083 - 35247163
Alignment:
Q  321 gcatcccataattttactgttttatcagcagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatg 401  Q
    |||||||||| ||||||||||  ||||  ||||| |||||||||| |||| |||  ||||||||||||||| |||||||||    
T  35247083 gcatcccatagttttactgttccatcacgagaagttgttgcaaatctagttgattttggttgaaatctaacttctaagatg 35247163  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 35253480 - 35253529
Alignment:
Q  112 tcccatactttaattacatcacaggtatcagacgagcaaataattcctcc 161  Q
    ||||||||||||||||||||||||||||| |||| ||||| || ||||||    
T  35253480 tcccatactttaattacatcacaggtatcggacgtgcaaagaactcctcc 35253529  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 35271325 - 35271386
Alignment:
Q  95 tgacacgctgattgaggtcccatactttaattacatcacaggtatcagacgagcaaataatt 156  Q
    |||||| ||| | ||| ||||||||||||||| ||||||| |||||||||||||||| ||||    
T  35271325 tgacacactgttcgagatcccatactttaattgcatcacatgtatcagacgagcaaagaatt 35271386  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 35275349 - 35275391
Alignment:
Q  91 atcatgacacgctgattgaggtcccatactttaattacatcac 133  Q
    |||||||||||||||||||| ||||||| ||||||| ||||||    
T  35275349 atcatgacacgctgattgagatcccataatttaattgcatcac 35275391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Original strand, 35275605 - 35275658
Alignment:
Q  349 cagaagatgttgcaaatatagtcgatcctggttgaaatctaacatctaagatgg 402  Q
    ||||||| |||||||||||||  ||| |||||||||||||||  ||||||||||    
T  35275605 cagaagaagttgcaaatataggtgatgctggttgaaatctaaattctaagatgg 35275658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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