View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12825_low_1 (Length: 658)

Name: NF12825_low_1
Description: NF12825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12825_low_1
NF12825_low_1
[»] chr3 (1 HSPs)
chr3 (19-640)||(17107711-17108337)


Alignment Details
Target: chr3 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 19 - 640
Target Start/End: Original strand, 17107711 - 17108337
Alignment:
Q  19 actctttacgtggagtgaggttttaaacctaacttgtaacatcaaatcagaccacagggctggatctgcatatctggaattgatcaggagtattgtggac 118  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||| |||  |||||||||||||| |||||||||||||||||||||||||||||||||    
T  17107711 actctttacgtggagtgaggttttatacctaacttgcaacatcaaaccagttcacagggctggatcagcatatctggaattgatcaggagtattgtggac 17107810  T
Q  119 acctatatgcatcgacaacaatacaagtaagtctaatttttatcgaagctttgatcactatgctagaattctagtagatattgatctttctggacagtta 218  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||    
T  17107811 acctatatgcatcgacaacaatactagcaagtctaatttttatcgaagctttgatcaccatgctagaattctggtagatgttgatctttctggaaagtta 17107910  T
Q  219 catgataaaatgttagttgaaagatctgaatactcattctatgtggacattga-----ttctgaaaaactccatagtttggtaatgttagcaaaaatgtt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||    
T  17107911 catgataaaatgttagttgaaagatctgaatactcattctatgtggacattgatttgattctgaaaaactccatagtttggtaatgttagcaaaaatgtt 17108010  T
Q  314 cggcattcgatcaatgagtgcaagaaagccaagatttatagagatgataaggaggataaaaaatgctaaagctcgtaaaaagattcccataaaggttcta 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17108011 cggcattcgatcaatgagtgcaagaaagccaagatttatagagatgataaggaggataaaaaatgctaaagctcgtaaaaagattcccataaaggttcta 17108110  T
Q  414 tgcaaatatgtcaataatcccattatggcttacaataatgatactgtcgtattggaaagcgatgataatcatcatcatgttaaaattaatgacgcaaaca 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  17108111 tgcaaatatgtcaataatcccattatggcttacaataatgatactgtcatattggaaagcgatgataatcatcatcattttaaaatcaatgacgcaaaca 17108210  T
Q  514 aagatggtaataactataatcgggttaatctcatgttagggttaccaacacggaagagcttgacaaggaatttaatcaacttaatatggaatcatttctt 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17108211 aagatggtaataactataatcgggttaatctcatgttagggttaccaacacggaagagcttgacaaggaatttaatcaacttaatatggaatcatttctt 17108310  T
Q  614 attagggttagtaacattgaaaaatat 640  Q
    |||||||||||||||||||||||||||    
T  17108311 attagggttagtaacattgaaaaatat 17108337  T

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