View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12826_high_11 (Length: 249)
Name: NF12826_high_11
Description: NF12826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12826_high_11 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 49012560 - 49012323
Alignment:
| Q |
13 |
aggaaaaatgaacaaaacttgaattagataagttcaatatgataaacaccatgatttcaacaataaattgcgtggataactatctcattaccacacaaca |
112 |
Q |
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| T |
49012560 |
aggaaaaatgaacaaaacttgaattagataagttcaatatgataaacaccatgatttcaacaataaattacgtggataactatctcattaccacacaaca |
49012461 |
T |
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| Q |
113 |
aaacttatttaagcttaataattcagcttagcaacaagtctcaattttctttcttcttgctcaaatcaaagtcaaaatataaaactaaactaa-----ac |
207 |
Q |
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| T |
49012460 |
aaacttatttaagcttaataattcagcttagcaacaagtctcaattttctttcttcttgctcaaatcaaagtcaaaatataaaactaaactaaactaaac |
49012361 |
T |
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| Q |
208 |
tagcagataataaagatactttctttctccaacaattcaatc |
249 |
Q |
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| T |
49012360 |
tagcagataataaagata----ctttctccaacaattcaatc |
49012323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 119 - 231
Target Start/End: Complemental strand, 49013924 - 49013818
Alignment:
| Q |
119 |
atttaagcttaataattcagcttagcaacaagtctcaattttctttcttcttgctcaaatcaaagtcaaaatataaaactaaactaaactagcagataat |
218 |
Q |
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| T |
49013924 |
atttaagcttaata-ttcagcttagcaacaagtctcaattttctttcttctagcgcaaat-taagtcaaaatacaa----aaattaaattagcagataat |
49013831 |
T |
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| Q |
219 |
aaagatactttct |
231 |
Q |
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| T |
49013830 |
gaagatactttct |
49013818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 17589489 - 17589537
Alignment:
| Q |
184 |
tcaaaatataaaactaaactaaactagcagataataaagatactttctt |
232 |
Q |
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| T |
17589489 |
tcaaaatataaaactaaactaaactagcagataataaagatactttctt |
17589537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 49014033 - 49014000
Alignment:
| Q |
31 |
ttgaattagataagttcaatatgataaacaccat |
64 |
Q |
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| T |
49014033 |
ttgaattaaataagttcaatatgataaacaccat |
49014000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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