View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12826_high_15 (Length: 238)

Name: NF12826_high_15
Description: NF12826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12826_high_15
NF12826_high_15
[»] chr2 (2 HSPs)
chr2 (17-183)||(10922540-10922706)
chr2 (180-227)||(10935174-10935221)
[»] chr4 (1 HSPs)
chr4 (78-164)||(45407567-45407654)


Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 10922540 - 10922706
Alignment:
Q  17 agtatacgtatgctggcgtgcaagaaaagctttacaaggattcaaacaaaaccatagattgagatatgccggcattttttcctcgttaaatcaaagccgg 116  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  10922540 agtattcgtatgccggcgtgcaagaaaagctttacaaggattcaaacaaaactatagattgagatatgcgggcattttttcctcgttaaatcaaagccgg 10922639  T
Q  117 ccacgttcattgcagtgatcgtaacatgaatgtcttattataagtgttttctatgtgttaatgttat 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10922640 ccacgttcattgcagtgatcgtaacatgaatgtcttattataagtgttttctatgtgttaatgttat 10922706  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 10935174 - 10935221
Alignment:
Q  180 ttataacattttaaagattacatatgcttctacaaatatttccttcat 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10935174 ttataacattttaaagattacatatgcttctacaaatatttccttcat 10935221  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 45407567 - 45407654
Alignment:
Q  78 agatatgccggcat-tttttcctcgttaaatcaaagccggccacgttcattgcagtgatcgtaacatgaatgtcttattataagtgtt 164  Q
    |||||||||||||| ||||||||  ||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  45407567 agatatgccggcatatttttcctaattagatcaaagccggccatgttcattgcagtaatcgtaacatgaatgtcttattataagtgtt 45407654  T

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