View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12826_high_16 (Length: 236)
Name: NF12826_high_16
Description: NF12826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12826_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 49012255 - 49012037
Alignment:
| Q |
1 |
ctaattaaatatcttcagtactaccccatataaaaagttagaaccccatttcaaattatcaaaaccttgaccaataattaaacctaaattattgatctac |
100 |
Q |
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| T |
49012255 |
ctaattaaatatcttcagtactaccccatataaaaagttagaaccccatttcaaattatcaaaaccttgaccaataattaaacctaaattattgatctac |
49012156 |
T |
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| Q |
101 |
taaacttaaatttttcattctcaactacttactcttaaccgttaatccaagttcacctgcaacaataacagtagtagccatatccaaaaacattccatgc |
200 |
Q |
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| T |
49012155 |
taaacttaaatttttcattctcgactacttactcttaaccgttaatccaagttcacctgcaacaataacagtagtagccatatccaaaaacattccatgc |
49012056 |
T |
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| Q |
201 |
tccacaactccggcaatat |
219 |
Q |
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||||||||||| ||||||| |
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| T |
49012055 |
tccacaactccagcaatat |
49012037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 189
Target Start/End: Complemental strand, 49013664 - 49013571
Alignment:
| Q |
96 |
tctactaaacttaaatttttcattctcaactacttactcttaaccgttaatccaagttcacctgcaacaataacagtagtagccatatccaaaa |
189 |
Q |
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||||||||||||||||| | ||||||||| ||||| |||| | |||||| |||||||||||||||| ||||||| ||||| || ||||||||| |
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| T |
49013664 |
tctactaaacttaaattctgaattctcaacgacttaatcttcaacgttaacccaagttcacctgcaataataacactagtaaccttatccaaaa |
49013571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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