View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12826_high_19 (Length: 223)

Name: NF12826_high_19
Description: NF12826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12826_high_19
NF12826_high_19
[»] chr8 (4 HSPs)
chr8 (42-212)||(14784135-14784305)
chr8 (68-156)||(38977089-38977177)
chr8 (68-156)||(39008187-39008275)
chr8 (68-156)||(32970831-32970919)
[»] chr2 (1 HSPs)
chr2 (42-216)||(33573212-33573386)
[»] chr1 (1 HSPs)
chr1 (90-216)||(33366190-33366316)
[»] chr5 (1 HSPs)
chr5 (128-216)||(29193619-29193707)
[»] chr3 (2 HSPs)
chr3 (68-156)||(18453797-18453885)
chr3 (68-156)||(52279275-52279363)
[»] chr4 (1 HSPs)
chr4 (68-140)||(14871253-14871325)


Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 42 - 212
Target Start/End: Complemental strand, 14784305 - 14784135
Alignment:
Q  42 aggagaacatggaggacaattgatggcagctgttggtaaagatgcaaacaaccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaagat 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14784305 aggagaacatggaggacaattgatggcagctgttggtaaagatgcaaacagccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaagat 14784206  T
Q  142 tcatgggagtggtttctgaatctattacttgaagatctacaaactatacaacacaagcaatatgcattcat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14784205 tcatgggagtggtttctgaatctattacttgaagatctacaaactatacaacacaagcaatatgcattcat 14784135  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 38977089 - 38977177
Alignment:
Q  68 cagctgttggtaaagatgcaaacaaccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaagattcatgggagtggttt 156  Q
    ||||||||||||||||||  ||||| |||||| | |||||||| | ||| ||||| ||||| |||||||||||||||||||| ||||||    
T  38977089 cagctgttggtaaagatggtaacaatcaaatgatacccattgcctttgctgttgtggaagctgaaacaaaagattcatgggattggttt 38977177  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 39008187 - 39008275
Alignment:
Q  68 cagctgttggtaaagatgcaaacaaccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaagattcatgggagtggttt 156  Q
    ||||||||||||||||||  ||||| |||||| | |||||||| | ||| ||||| ||||| |||||||||||||||||||| ||||||    
T  39008187 cagctgttggtaaagatggtaacaatcaaatgatacccattgcctttgctgttgtggaagctgaaacaaaagattcatgggattggttt 39008275  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 32970831 - 32970919
Alignment:
Q  68 cagctgttggtaaagatgcaaacaaccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaagattcatgggagtggttt 156  Q
    ||||||||||||||||||  ||||| |||||| | ||||| || | ||  ||||| ||||| |||||||||||||||||||| ||||||    
T  32970831 cagctgttggtaaagatggtaacaatcaaatgatacccatagcctttgttgttgtggaagctgaaacaaaagattcatgggattggttt 32970919  T

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Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 42 - 216
Target Start/End: Original strand, 33573212 - 33573386
Alignment:
Q  42 aggagaacatggaggacaattgatggcagctgttggtaaagatgcaaacaaccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaagat 141  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33573212 aggagaacatggaggacaattgatggcagttgttggtaaagacgcaaacaaccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaagat 33573311  T
Q  142 tcatgggagtggtttctgaatctattacttgaagatctacaaactatacaacacaagcaatatgcattcatctca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33573312 tcatgggagtggtttctgaatctattacttgaagatctacaaactatacaacacaagcaatatgcattcatctca 33573386  T

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Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 90 - 216
Target Start/End: Complemental strand, 33366316 - 33366190
Alignment:
Q  90 caaccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaagattcatgggagtggtttctgaatctattacttgaagatctacaaactata 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33366316 caaccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaagattcatgggagtggtttctgaatctattacttgaagatctacaaactata 33366217  T
Q  190 caacacaagcaatatgcattcatctca 216  Q
    |||||||||||||||||||||||||||    
T  33366216 caacacaagcaatatgcattcatctca 33366190  T

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Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 29193619 - 29193707
Alignment:
Q  128 cagaaacaaaagattcatgggagtggtttctgaatctattacttgaagatctacaaactatacaacacaagcaatatgcattcatctca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29193619 cagaaacaaaagattcatgggagtggtttctgaatctattacttgaagatctacaaactatacaacacaaacaatatgcattcatctca 29193707  T

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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 18453885 - 18453797
Alignment:
Q  68 cagctgttggtaaagatgcaaacaaccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaagattcatgggagtggttt 156  Q
    ||||||||||||||||||  ||||| |||||| | |||||||| | ||| ||||| ||||| |||||||||||||||||||| ||||||    
T  18453885 cagctgttggtaaagatggtaacaatcaaatgatacccattgcctttgctgttgtggaagctgaaacaaaagattcatgggattggttt 18453797  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 52279363 - 52279275
Alignment:
Q  68 cagctgttggtaaagatgcaaacaaccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaagattcatgggagtggttt 156  Q
    ||||||||||||||||||  ||||| |||||| | |||||||| | ||| ||||| ||||| |||||||||||||||||||| ||||||    
T  52279363 cagctgttggtaaagatggtaacaatcaaatgatacccattgcctttgctgttgtggaagctgaaacaaaagattcatgggattggttt 52279275  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 14871253 - 14871325
Alignment:
Q  68 cagctgttggtaaagatgcaaacaaccaaatgtttcccattgcttatgccgttgtagaagcagaaacaaaaga 140  Q
    ||||||||||||||||||  ||||| |||||| | ||||| |||| ||| ||||| ||||| ||||| |||||    
T  14871253 cagctgttggtaaagatggtaacaatcaaatgatccccatagcttttgctgttgtggaagctgaaactaaaga 14871325  T

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