View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12826_high_3 (Length: 410)

Name: NF12826_high_3
Description: NF12826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12826_high_3
NF12826_high_3
[»] chr7 (7 HSPs)
chr7 (196-398)||(1288754-1288956)
chr7 (17-189)||(1288122-1288275)
chr7 (307-391)||(1288937-1289021)
chr7 (225-377)||(6897981-6898132)
chr7 (207-319)||(29477817-29477932)
chr7 (247-328)||(4579965-4580047)
chr7 (242-377)||(25831949-25832084)
[»] chr4 (9 HSPs)
chr4 (196-377)||(15020017-15020200)
chr4 (196-377)||(55081250-55081433)
chr4 (224-377)||(16595547-16595700)
chr4 (196-377)||(20513470-20513653)
chr4 (208-329)||(40684423-40684547)
chr4 (214-328)||(39991498-39991613)
chr4 (280-377)||(33722558-33722655)
chr4 (280-328)||(8536705-8536754)
chr4 (208-328)||(2574898-2575021)
[»] chr1 (9 HSPs)
chr1 (231-373)||(2493407-2493549)
chr1 (196-374)||(19309158-19309337)
chr1 (196-379)||(31064317-31064502)
chr1 (224-377)||(23191600-23191753)
chr1 (196-377)||(27761389-27761571)
chr1 (242-377)||(28857659-28857794)
chr1 (196-307)||(12906574-12906688)
chr1 (224-366)||(24159399-24159541)
chr1 (196-261)||(36725187-36725254)
[»] chr6 (9 HSPs)
chr6 (196-377)||(32814619-32814802)
chr6 (196-377)||(14042007-14042190)
chr6 (198-377)||(35129990-35130170)
chr6 (196-262)||(28969592-28969660)
chr6 (294-377)||(5496230-5496312)
chr6 (247-328)||(22610012-22610094)
chr6 (222-319)||(32551077-32551175)
chr6 (287-327)||(8748227-8748267)
chr6 (247-326)||(17914056-17914136)
[»] chr8 (9 HSPs)
chr8 (225-377)||(2470339-2470491)
chr8 (196-377)||(19950182-19950365)
chr8 (196-377)||(19954636-19954819)
chr8 (269-326)||(21416377-21416435)
chr8 (302-377)||(4543950-4544024)
chr8 (225-262)||(34517677-34517714)
chr8 (226-360)||(29793081-29793214)
chr8 (288-328)||(31449476-31449516)
chr8 (247-327)||(43302253-43302336)
[»] chr3 (5 HSPs)
chr3 (231-376)||(4662529-4662674)
chr3 (196-261)||(48435435-48435500)
chr3 (247-328)||(8888373-8888455)
chr3 (249-322)||(35456510-35456584)
chr3 (231-288)||(29067681-29067738)
[»] chr5 (7 HSPs)
chr5 (196-377)||(18265054-18265236)
chr5 (287-328)||(6155022-6155063)
chr5 (294-327)||(1429724-1429757)
chr5 (196-262)||(16747778-16747846)
chr5 (287-328)||(32461156-32461197)
chr5 (280-319)||(13290886-13290926)
chr5 (277-328)||(16639150-16639202)
[»] chr2 (3 HSPs)
chr2 (247-328)||(13291079-13291161)
chr2 (294-377)||(14104954-14105036)
chr2 (225-319)||(41558643-41558738)
[»] scaffold0018 (1 HSPs)
scaffold0018 (288-376)||(171358-171444)
[»] scaffold0555 (1 HSPs)
scaffold0555 (197-261)||(4756-4822)
[»] scaffold0009 (1 HSPs)
scaffold0009 (197-273)||(148757-148835)
[»] scaffold0182 (1 HSPs)
scaffold0182 (247-328)||(9450-9532)
[»] scaffold0226 (1 HSPs)
scaffold0226 (196-325)||(5811-5943)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 196 - 398
Target Start/End: Original strand, 1288754 - 1288956
Alignment:
Q  196 gtgttgacaaactattcatttcttctccctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtccttcaga 295  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1288754 gtgttgacaaactattcatttcttctccctttttatatcccgtcgtatttaaagagtgttcttaagaacttagtcccttcgagatataatgtccttcaga 1288853  T
Q  296 attaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtccttcttaagagcatagtcc 395  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1288854 attaataatggtcttaagagcataatcccttcagcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtccttcttaagagcatagtcc 1288953  T
Q  396 ctt 398  Q
    |||    
T  1288954 ctt 1288956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 1288122 - 1288275
Alignment:
Q  17 agggttatccttatacgtggtggaggagaaaatgggcagatagagaagttgagcagagattggatagaacgacggtcatggacagatggctctgttcgaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||| |||    
T  1288122 agggttatccttatacgtggtggaggagaaaatgggcagatagagaagttgagcagagattggatagaacgacg-------------------gttggaa 1288202  T
Q  117 caccaagtgtgtttgtgtgaattgaaaaattactatgtcccatatcaggtagattatacacacaatattagtg 189  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  1288203 caccaagtgtgtttgtgtgaattgaaaaattattatgtcccatatccggtagattatacacacaatattagtg 1288275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 391
Target Start/End: Original strand, 1288937 - 1289021
Alignment:
Q  307 tcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtccttcttaagagcata 391  Q
    ||||||||||||| ||||||||  |||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||    
T  1288937 tcttaagagcatagtcccttcgctaaaactttgtcccttcgaaaataagagtatttttaaaattagagtccttcttaagagcata 1289021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 377
Target Start/End: Original strand, 6897981 - 6898132
Alignment:
Q  225 tttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtc-cttcagaattaataatggtcttaagagcataatcc 323  Q
    ||||| |||||| ||| ||||||||||||||||||||  | || ||||||||   || |||||| |||| ||||||| ||||||||||||| |||| |||    
T  6897981 tttttctgtcccttcgaatttaaagagtgttcttaaggtcatagtcccttcggttta-aatgtctcttcggaattaagaatggtcttaagaacatagtcc 6898079  T
Q  324 cttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 377  Q
    |||||| |||| || || |||| | ||||||||||||| |||| ||||||||||    
T  6898080 cttcggtaaaa-ttcgttccttcataaataagagtattcttaagatcatagtcc 6898132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 319
Target Start/End: Original strand, 29477817 - 29477932
Alignment:
Q  207 ctattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataa 303  Q
    |||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||  | ||||||||||    |||||| | ||||| ||||||| ||    
T  29477817 ctattcttttcttctccctccttttctgtcccttcggatttaaagagtgttcttaaggtcataatcccttcagtttataatatcccttcggaattaagaa 29477916  T
Q  304 tggtcttaagagcata 319  Q
    ||||||||||| ||||    
T  29477917 tggtcttaagaacata 29477932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 328
Target Start/End: Complemental strand, 4580047 - 4579965
Alignment:
Q  247 aagagtgttcttaagaacttaatcccttcgagatataatgtcctt-cagaattaataatggtcttaagagcataatcccttcg 328  Q
    |||||||||||||||| | |||||||||   | ||||||||| || ||||||||| |||||| ||||||||||| ||||||||    
T  4580047 aagagtgttcttaagaccataatcccttttcggtataatgtcatttcagaattaagaatggttttaagagcatagtcccttcg 4579965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 377
Target Start/End: Original strand, 25831949 - 25832084
Alignment:
Q  242 atttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaagagcataatcccttcggcaaaactttgt 340  Q
    |||||||||||||||||| || | ||  || || |||| ||||||| ||||  ||||||| ||||||||||| | |||| || |||| | |||  |||||    
T  25831949 atttaaagagtgttcttatgaccatagcccatttgagaaataatgttcctttggaattaagaatggtcttaaaaacatagtcacttcagtaaat-tttgt 25832047  T
Q  341 ccctttaaaaataagagtatttttaaaatcatagtcc 377  Q
    |||||  |||||||||||||| |||| ||||||||||    
T  25832048 cccttcgaaaataagagtattcttaagatcatagtcc 25832084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 196 - 377
Target Start/End: Original strand, 15020017 - 15020200
Alignment:
Q  196 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 292  Q
    |||||||||| |||||| |||||||| |||  |||| |||||||||| |||| |||| ||||||||||| | || |||||| |||||||||||||| |||    
T  15020017 gtgttgacaagctattcttttcttcttcctctttttctgtcccgtcggatttcaagaatgttcttaagaccatagtccctttgagatataatgtccattc 15020116  T
Q  293 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 377  Q
    | ||||||  ||||||||||||||||| |||||||||  ||| |||||||||||  |||||||||||||||||| ||||||||||    
T  15020117 aaaattaaggatggtcttaagagcatagtcccttcgg-taaattttgtccctttggaaataagagtatttttaagatcatagtcc 15020200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 196 - 377
Target Start/End: Original strand, 55081250 - 55081433
Alignment:
Q  196 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtc-cttc 292  Q
    |||||||| | |||||| |||| |||||||  |||| |||||| ||| ||||||||||||||||||||  | || ||||||||   ||||| ||| ||||    
T  55081250 gtgttgacgagctattcttttcctctccctctttttctgtcccttcgaatttaaagagtgttcttaaggccatagtcccttcggtttataacgtctcttc 55081349  T
Q  293 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 377  Q
    |||||||| ||||||||||||| |||| ||||||||| |||| || ||||||| | ||||||||||||| |||| ||||||||||    
T  55081350 agaattaagaatggtcttaagaacatagtcccttcgggaaaa-ttcgtcccttcagaaataagagtattcttaagatcatagtcc 55081433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 224 - 377
Target Start/End: Original strand, 16595547 - 16595700
Alignment:
Q  224 ctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatc 322  Q
    |||||| |||||| ||| ||||||||||||||||||||  | || ||  || |   || ||||||| ||||||||||| ||||||||||||| |||| ||    
T  16595547 ctttttttgtcccttcgaatttaaagagtgttcttaaggccatagtctatttggtttaaaatgtcccttcagaattaagaatggtcttaagaacatagtc 16595646  T
Q  323 ccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 377  Q
    |||| || |||| |||||||||| | |||||||||||||||||| ||||||||||    
T  16595647 ccttaggtaaaa-tttgtcccttcagaaataagagtatttttaagatcatagtcc 16595700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 377
Target Start/End: Complemental strand, 20513653 - 20513470
Alignment:
Q  196 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 292  Q
    |||||||| | |||||| ||||||||||||  |||| |||||  ||| ||||||||| || |||||| ||| |||||||||||   || ||||||| |||    
T  20513653 gtgttgacgagctattcttttcttctccctctttttctgtcctttcggatttaaagaatggtcttaaaaacataatcccttcggtttaaaatgtcccttc 20513554  T
Q  293 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 377  Q
      |||||| |||||| |||||| |||| ||||||||| |||| || ||| ||| | ||||||||||||| |||| ||||||||||    
T  20513553 gaaattaagaatggttttaagaacatagtcccttcggtaaaa-ttcgtctcttcagaaataagagtattcttaagatcatagtcc 20513470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 40684423 - 40684547
Alignment:
Q  208 tattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataat 304  Q
    ||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||  | || ||| ||||   |||||||| |||| |||||||| |||    
T  40684423 tattcttttcttctccctgtttttctgtcccttcggatttaaagagtgttcttaaggtcatagtccattcggtttataatgtccctttagaattaagaat 40684522  T
Q  305 ggtcttaagagcataatcccttcgg 329  Q
    |||||||||| |||| ||| |||||    
T  40684523 ggtcttaagaacatagtccattcgg 40684547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 328
Target Start/End: Original strand, 39991498 - 39991613
Alignment:
Q  214 tttcttctccctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaa 312  Q
    ||||| |||||||||||| | || ||| |||||||||||||| |||||| |  | ||| |||| |||||||| | |||||  || ||| |||||||||||    
T  39991498 tttctcctccctttttatcttccatcggatttaaagagtgtttttaagaccacagtccattcgtgatataatctcccttcgaaagtaagaatggtcttaa 39991597  T
Q  313 gagcataatcccttcg 328  Q
    ||||||| || |||||    
T  39991598 gagcatagtctcttcg 39991613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 377
Target Start/End: Original strand, 33722558 - 33722655
Alignment:
Q  280 tataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 377  Q
    |||||||||| ||| ||||||| ||||||||||||| |||| ||| |||||  ||| |||||| |||  |||||||||||||| |||| |||| |||||    
T  33722558 tataatgtcccttcggaattaagaatggtcttaagaacatagtccattcgg-taaattttgtcgcttcgaaaataagagtattcttaagatcaaagtcc 33722655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 8536754 - 8536705
Alignment:
Q  280 tataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcg 328  Q
    |||||||||| ||||||||||| |||||| |||||||||||||| |||||    
T  8536754 tataatgtccattcagaattaagaatggttttaagagcataatctcttcg 8536705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 2574898 - 2575021
Alignment:
Q  208 tattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataat 304  Q
    ||||| ||||||||||||  |||| | |||||||| ||| | ||| |||||||||||   ||||| |||  ||| | ||||||| |||| || ||| |||    
T  2574898 tattcttttcttctccctctttttctatcccgtcggattcagagaatgttcttaagactataatctctttaagaaacaatgtcccttcaaaactaagaat 2574997  T
Q  305 ggtcttaagagcataatcccttcg 328  Q
    ||||||||||||||| ||||||||    
T  2574998 ggtcttaagagcatagtcccttcg 2575021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 231 - 373
Target Start/End: Original strand, 2493407 - 2493549
Alignment:
Q  231 tgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcgg 329  Q
    |||||||| | ||||||||| |||| |||||| | || ||||||||||| ||||||||| ||| ||||||| |||||||||||||||||| |||||||||    
T  2493407 tgtcccgtaggatttaaagaatgtttttaagaccatagtcccttcgagaaataatgtcccttcggaattaagaatggtcttaagagcatagtcccttcgg 2493506  T
Q  330 caaaactttgtccctttaaaaataagagtatttttaaaatcata 373  Q
      ||| ||||||||||  |||||||||||||| |||| ||||||    
T  2493507 -taaattttgtcccttcgaaaataagagtattcttaagatcata 2493549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 196 - 374
Target Start/End: Original strand, 19309158 - 19309337
Alignment:
Q  196 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 292  Q
    |||||||| | |||||| ||||||||||||  |||| || ||| ||| ||||||||||||||||||||  | || || |||||   |||||||||| |||    
T  19309158 gtgttgacgagctattcttttcttctccctctttttctgacccttcggatttaaagagtgttcttaaggtcatagtctcttcggtttataatgtcccttc 19309257  T
Q  293 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatag 374  Q
     ||||||||||||||||||||| |||| ||||||| | |||  ||| ||| ||| |||||||||||||| |||| |||||||    
T  19309258 ggaattaataatggtcttaagaacatagtcccttcagtaaa--tttttccattttaaaataagagtattattaagatcatag 19309337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 196 - 379
Target Start/End: Complemental strand, 31064502 - 31064317
Alignment:
Q  196 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttc 292  Q
    |||||||| |||||||| ||| ||||||||  ||||||||||| ||| ||||||||||||||||||||| | || || ||| |   || ||||| |||||    
T  31064502 gtgttgacgaactattcttttattctccctctttttatgtcccttcggatttaaagagtgttcttaagatcatagtctctttggtttaaaatgtcccttc 31064403  T
Q  293 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcctt 379  Q
     ||||| | ||||||||||||| |||| ||||||||| |||| || |||||||   |||||||| |||| |||| ||||||||||||    
T  31064402 ggaattgagaatggtcttaagaacatagtcccttcggtaaaa-ttagtcccttctgaaataagactattcttaagatcatagtcctt 31064317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 224 - 377
Target Start/End: Original strand, 23191600 - 23191753
Alignment:
Q  224 ctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatc 322  Q
    |||||| |||| ||||| ||||||||||| || |||||| | |  ||||||| ||| ||||||||| ||| ||||||| ||| |||| || | |||| ||    
T  23191600 ctttttctgtctcgtcggatttaaagagtttttttaagaccatggtcccttcaagaaataatgtcccttcggaattaagaatagtctcaatatcatagtc 23191699  T
Q  323 ccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 377  Q
     |||||| |||  |||||||||||||||||||||||||| |||| ||||||||||    
T  23191700 tcttcggtaaat-tttgtccctttaaaaataagagtattcttaagatcatagtcc 23191753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 377
Target Start/End: Original strand, 27761389 - 27761571
Alignment:
Q  196 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttc 292  Q
    |||||||| | |||||| |||| |||||||  |||| |||||| ||| ||||||||||||||||||||  | || |||||| |   || ||||| |||||    
T  27761389 gtgttgacgagctattcttttcctctccctctttttctgtcccttcgaatttaaagagtgttcttaaggccatagtccctttggtttaaaatgtcccttc 27761488  T
Q  293 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 377  Q
    |||| ||| |||||||||||||  ||| ||||||||| |||| || ||||||| |||||||||||| || |||| ||||||||||    
T  27761489 agaa-taagaatggtcttaagaaaatagtcccttcggtaaaa-ttcgtcccttcaaaaataagagtgttcttaagatcatagtcc 27761571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 242 - 377
Target Start/End: Original strand, 28857659 - 28857794
Alignment:
Q  242 atttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcggcaaaactttgt 340  Q
    |||||| |||||||||| ||  |||| ||| ||||   || ||||||| ||||||||||| ||||||||||||| |||| ||||||||| |||| || ||    
T  28857659 atttaatgagtgttcttcaggtcttagtcctttcggtttaaaatgtccattcagaattaagaatggtcttaagaacatagtcccttcggtaaaa-ttcgt 28857757  T
Q  341 ccctttaaaaataagagtatttttaaaatcatagtcc 377  Q
    ||||| | ||||||||||||| |||| ||||||||||    
T  28857758 cccttcagaaataagagtattcttaagatcatagtcc 28857794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 307
Target Start/End: Complemental strand, 12906688 - 12906574
Alignment:
Q  196 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttc 292  Q
    |||||||| | |||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||  | || ||||||||   |||||||| |||||    
T  12906688 gtgttgacgagctattcttttcttctccctctttttctgtcccttcggatttaaagagtgttcttaaggccatagtcccttcggtttataatgtcccttc 12906589  T
Q  293 agaattaataatggt 307  Q
     ||||||| ||||||    
T  12906588 ggaattaagaatggt 12906574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 366
Target Start/End: Original strand, 24159399 - 24159541
Alignment:
Q  224 ctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaagagcataatc 322  Q
    |||||| |||||| ||  |||||||| |||||||||||  | || ||||||||   || ||||| ||||| ||||||| || |||||||||| |||| ||    
T  24159399 ctttttctgtcccttcagatttaaagggtgttcttaaggccatagtcccttcggtttaaaatgtcccttcggaattaagaacggtcttaagaacatagtc 24159498  T
Q  323 ccttcggcaaaactttgtccctttaaaaataagagtatttttaa 366  Q
    ||||||| |||| || ||||||| | ||||||||||||| ||||    
T  24159499 ccttcggtaaaa-ttcgtcccttcagaaataagagtattcttaa 24159541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 36725254 - 36725187
Alignment:
Q  196 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaag 261  Q
    |||||||| | |||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||    
T  36725254 gtgttgacgagctattcttttcttctccctctttttctgtcccttcggatttaaagagtgttcttaag 36725187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 196 - 377
Target Start/End: Original strand, 32814619 - 32814802
Alignment:
Q  196 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttc 292  Q
    |||||||| | |||||| |||| |||||||  ||||||||||||||  ||||||||||||||||||||| | || ||||||| ||| ||||| | |||||    
T  32814619 gtgttgacgagctattcttttcctctccctctttttatgtcccgtcaaatttaaagagtgttcttaagaccatagtcccttcaagaaataatttcccttc 32814718  T
Q  293 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 377  Q
    |||||||| ||| |||| |||||| || |||||||||  ||| ||||||||||  ||||||||  |||| |||| ||||||||||    
T  32814719 agaattaagaatagtctcaagagcttagtcccttcgg-taaattttgtcccttcgaaaataagtttattcttaatatcatagtcc 32814802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 377
Target Start/End: Complemental strand, 14042190 - 14042007
Alignment:
Q  196 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 292  Q
    |||||||| | |||||| ||||||||||||  |||| |||||| ||| |||||||| ||||||| |||  | || ||||||||   |||||||||| |||    
T  14042190 gtgttgacgagctattcttttcttctccctctttttctgtcccttcggatttaaagtgtgttctaaaggccatagtcccttcggtttataatgtcccttc 14042091  T
Q  293 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 377  Q
      |||||| ||||||||||||| |||| | ||||||| |||  ||||||||||  |||||||||||||| |||| |||| |||||    
T  14042090 gaaattaagaatggtcttaagaacatagttccttcggtaaat-tttgtcccttcgaaaataagagtattcttaagatcaaagtcc 14042007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 198 - 377
Target Start/End: Complemental strand, 35130170 - 35129990
Alignment:
Q  198 gttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcag 294  Q
    |||||||| |||||| |||| |||||||  |||| |||||| ||| ||||||||| ||||||||||  | || ||||||||   |||||||||| ||| |    
T  35130170 gttgacaatctattcttttcctctccctctttttctgtcccttcggatttaaagaatgttcttaaggtcatagtcccttcggtttataatgtccattcgg 35130071  T
Q  295 aattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 377  Q
    |||||| ||||||||||||| |||| || ||||||  ||| ||||| ||||  |||||||||||||| |||| |||| |||||    
T  35130070 aattaagaatggtcttaagaacatagtctcttcgg-taaattttgt-ccttcgaaaataagagtattcttaagatcaaagtcc 35129990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 28969592 - 28969660
Alignment:
Q  196 gtgttgacaaactattcatttcttctcccttttt--atgtcccgtcgtatttaaagagtgttcttaaga 262  Q
    |||||||| | |||||| |||||||||||| |||  ||||||||||| |||| ||||||||||||||||    
T  28969592 gtgttgacgagctattcttttcttctccctcttttcatgtcccgtcggattttaagagtgttcttaaga 28969660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 377
Target Start/End: Complemental strand, 5496312 - 5496230
Alignment:
Q  294 gaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 377  Q
    ||||||| |||||||||||||||||| | |||||||  ||| ||| ||||||  ||||| |||||||| |||| ||||||||||    
T  5496312 gaattaaaaatggtcttaagagcatagttccttcgg-taaattttatcccttcgaaaattagagtattattaagatcatagtcc 5496230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 328
Target Start/End: Complemental strand, 22610094 - 22610012
Alignment:
Q  247 aagagtgttcttaagaacttaatcccttcgagatataatgtc-cttcagaattaataatggtcttaagagcataatcccttcg 328  Q
    |||||||||||||||| | |||||||||   | ||||||||| |||| ||||||| |||||| ||||||||||| || |||||    
T  22610094 aagagtgttcttaagaccataatcccttttcggtataatgtcacttcggaattaagaatggttttaagagcatagtctcttcg 22610012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 319
Target Start/End: Original strand, 32551077 - 32551175
Alignment:
Q  222 ccctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcata 319  Q
    |||||||||| || ||||  ||||| |||||||||||||||   || | |||||||| ||||||||||  ||| |||||||||| ||||||||| ||||    
T  32551077 ccctttttatttctcgtcagatttatagagtgttcttaagactatagttccttcgagttataatgtccgatcaaaattaataatagtcttaagaacata 32551175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 8748267 - 8748227
Alignment:
Q  287 tccttcagaattaataatggtcttaagagcataatcccttc 327  Q
    ||||||| ||| ||||||||||||||||||||| |||||||    
T  8748267 tccttcacaatcaataatggtcttaagagcatagtcccttc 8748227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 326
Target Start/End: Complemental strand, 17914136 - 17914056
Alignment:
Q  247 aagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatccctt 326  Q
    |||||||||||||||| | || ||| ||   |||||||||||| ||| ||||||| |||||||||||| ||||| ||||||    
T  17914136 aagagtgttcttaagaccatagtccattttcgatataatgtcccttcggaattaagaatggtcttaagtgcatagtccctt 17914056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 225 - 377
Target Start/End: Complemental strand, 2470491 - 2470339
Alignment:
Q  225 tttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaagagcataatcc 323  Q
    ||||| |||||| ||| ||||||||||||||||||||  | || |||||||    || ||||| ||||| ||||||| ||||||||||||| ||||  ||    
T  2470491 tttttctgtcccttcggatttaaagagtgttcttaaggtcatagtcccttcagtttaaaatgtcccttctgaattaagaatggtcttaagaacatagccc 2470392  T
Q  324 cttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 377  Q
    |||||| |||| || ||||||| |||||||||||||||||||| ||||||||||    
T  2470391 cttcggtaaaa-ttcgtcccttcaaaaataagagtatttttaagatcatagtcc 2470339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 377
Target Start/End: Complemental strand, 19950365 - 19950182
Alignment:
Q  196 gtgttgacaaactattcatttcttctccctttttat--gtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 292  Q
    |||||||| | |||||| |||| ||||||| ||| |  ||||| ||| ||||||||||||||||||||  | || ||||||||   || ||||||| |||    
T  19950365 gtgttgacgagctattcttttcctctccctctttttccgtcccttcggatttaaagagtgttcttaaggtcatagtcccttcggtttaaaatgtccattc 19950266  T
Q  293 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 377  Q
     |||| || ||||||||||||| |||| ||||||||| |||| |||||||| | | ||||||||||||| |||| ||||||||||    
T  19950265 ggaataaagaatggtcttaagaacatagtcccttcggtaaaa-tttgtcccatcagaaataagagtattcttaagatcatagtcc 19950182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 377
Target Start/End: Complemental strand, 19954819 - 19954636
Alignment:
Q  196 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttc 292  Q
    |||||||| | |||||| |||| |||||||  |||| | |||| ||| ||||||||||||||||||||  | || || |||||   || ||||| |||||    
T  19954819 gtgttgacgagctattcttttcctctccctctttttctctcccttcggatttaaagagtgttcttaaggccatagtctcttcggtttaaaatgtcccttc 19954720  T
Q  293 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 377  Q
     |||| || ||||||||||||| |||| ||||||||| |||| |||||||||| | ||||||||||||| |||| | ||||||||    
T  19954719 ggaataaagaatggtcttaagaacatagtcccttcggtaaaa-tttgtcccttcagaaataagagtattcttaagagcatagtcc 19954636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 326
Target Start/End: Original strand, 21416377 - 21416435
Alignment:
Q  269 tcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatccctt 326  Q
    ||||||||||| ||||||||| || |||||||| ||||||||||| |||||||||||||    
T  21416377 tcccttcgagaaataatgtcccttgagaattaagaatggtcttaatagcataatccctt 21416435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 377
Target Start/End: Original strand, 4543950 - 4544024
Alignment:
Q  302 aatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 377  Q
    ||||||||||||| |||| ||||||||| |||| || ||||||| | |||||| |||||| |||| ||||||||||    
T  4543950 aatggtcttaagaacatagtcccttcggtaaaa-ttcgtcccttcagaaataaaagtattcttaagatcatagtcc 4544024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 34517714 - 34517677
Alignment:
Q  225 tttttatgtcccgtcgtatttaaagagtgttcttaaga 262  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  34517714 tttttatgtcccgtcggatttaaagagtgtttttaaga 34517677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 360
Target Start/End: Complemental strand, 29793214 - 29793081
Alignment:
Q  226 ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatg-tccttcagaattaataatggtcttaagagcataatccc 324  Q
    |||| |||||| ||| |||||| ||| |  ||||||| | |||||||||||| |||||||| | ||||  |||||| |||| |||||||||| ||||| |    
T  29793214 ttttttgtcccttcgaatttaatgagcgaccttaagaccataatcccttcgaaatataatgtttcttcgaaattaagaatgatcttaagagcttaatctc 29793115  T
Q  325 ttcggcaaaactttgtccctttaaaaataagagtat 360  Q
    || |  | || |||||||||| |||| |||||||||    
T  29793114 tttg--ataattttgtcccttcaaaattaagagtat 29793081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 31449476 - 31449516
Alignment:
Q  288 ccttcagaattaataatggtcttaagagcataatcccttcg 328  Q
    ||||| ||||||| |||||||||||||||||| ||||||||    
T  31449476 ccttcggaattaagaatggtcttaagagcatagtcccttcg 31449516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 327
Target Start/End: Original strand, 43302253 - 43302336
Alignment:
Q  247 aagagtgttcttaagaactta--atcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttc 327  Q
    |||||||||||||||| | ||  |||||||   |||||| ||||| ||| |||| ||||||||||||||||||||| |||||||    
T  43302253 aagagtgttcttaagaccatataatcccttgtcgatatattgtccattcggaatcaataatggtcttaagagcatagtcccttc 43302336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 376
Target Start/End: Complemental strand, 4662674 - 4662529
Alignment:
Q  231 tgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcgg 329  Q
    |||||| ||| ||||||||||||||||||||  | || ||||||||   || ||||||| ||| ||||||| ||||||||||||| |||| ||||||||     
T  4662674 tgtcccttcggatttaaagagtgttcttaaggccatagtcccttcggtttaaaatgtcccttcggaattaagaatggtcttaagaacatagtcccttcga 4662575  T
Q  330 caaaactttgtccctttaaaaataagagtatttttaaaatcatagtc 376  Q
     |||| || ||||||| ||||||||||||||| |||| |||||||||    
T  4662574 taaaa-ttcgtcccttaaaaaataagagtattcttaagatcatagtc 4662529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 48435435 - 48435500
Alignment:
Q  196 gtgttgacaaactattcatttcttctccctttttatgtcccgtcgtatttaaagagtgttcttaag 261  Q
    |||||||||| |||||| |||| |||| ||||||||||||| ||  ||||||||||||||||||||    
T  48435435 gtgttgacaagctattcttttcctctctctttttatgtcccttcagatttaaagagtgttcttaag 48435500  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 328
Target Start/End: Complemental strand, 8888455 - 8888373
Alignment:
Q  247 aagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcg 328  Q
    |||||||||||||||| | || ||||||   | | |||||||| ||| ||||||| |||||||||||||||||| ||||||||    
T  8888455 aagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaagagcatagtcccttcg 8888373  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 322
Target Start/End: Original strand, 35456510 - 35456584
Alignment:
Q  249 gagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatc 322  Q
    |||||||||||||| |||||| |||    | |||||||||| ||| ||||||| |||||||||||||||||||||    
T  35456510 gagtgttcttaagaccttaattcctattcggtataatgtcccttcggaattaagaatggtcttaagagcataatc 35456584  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 29067681 - 29067738
Alignment:
Q  231 tgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtc 288  Q
    |||||||||| |||||||||||||| |||||| | || || ||||||| |||||||||    
T  29067681 tgtcccgtcgaatttaaagagtgtttttaagatcatagtcacttcgagttataatgtc 29067738  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 377
Target Start/End: Original strand, 18265054 - 18265236
Alignment:
Q  196 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatg-tccttc 292  Q
    |||||||| | |||||| |||| |||||||  |||| |||||| ||| ||||||||||||||||||||  | || ||||||||   || |||| ||||||    
T  18265054 gtgttgacgagctattcttttcctctccctctttttctgtcccttcggatttaaagagtgttcttaaggccctagtcccttcggtttaaaatgttccttc 18265153  T
Q  293 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 377  Q
     ||| ||| ||||||||||||| |||| ||||||||| |||| || ||||||| | ||||||||||||| |||| ||||||||||    
T  18265154 -gaaataagaatggtcttaagaacatagtcccttcggtaaaa-ttcgtcccttcagaaataagagtattcttaagatcatagtcc 18265236  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 328
Target Start/End: Original strand, 6155022 - 6155063
Alignment:
Q  287 tccttcagaattaataatggtcttaagagcataatcccttcg 328  Q
    ||||||||||| ||||||||||||||||||||| ||||||||    
T  6155022 tccttcagaatcaataatggtcttaagagcatagtcccttcg 6155063  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 327
Target Start/End: Original strand, 1429724 - 1429757
Alignment:
Q  294 gaattaataatggtcttaagagcataatcccttc 327  Q
    |||||||||||||||||||||||||| |||||||    
T  1429724 gaattaataatggtcttaagagcatagtcccttc 1429757  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 16747778 - 16747846
Alignment:
Q  196 gtgttgacaaactattcatttcttctccc--tttttatgtcccgtcgtatttaaagagtgttcttaaga 262  Q
    |||||||| | ||||||||||||||||||  ||||||||| || ||| ||||||| | |||||||||||    
T  16747778 gtgttgacgagctattcatttcttctccctttttttatgttccatcggatttaaaaaatgttcttaaga 16747846  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 328
Target Start/End: Original strand, 32461156 - 32461197
Alignment:
Q  287 tccttcagaattaataatggtcttaagagcataatcccttcg 328  Q
    |||||| |||| ||||||||||||||||||||| ||||||||    
T  32461156 tccttcggaatcaataatggtcttaagagcatagtcccttcg 32461197  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 319
Target Start/End: Original strand, 13290886 - 13290926
Alignment:
Q  280 tataatgtcctt-cagaattaataatggtcttaagagcata 319  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  13290886 tataatgtcctttcagaattaaaaatggtcttaagagcata 13290926  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 328
Target Start/End: Original strand, 16639150 - 16639202
Alignment:
Q  277 agatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcg 328  Q
    ||||||||||||| || |||||||| |||| ||||||||||||| ||||||||    
T  16639150 agatataatgtccctttagaattaaaaatgatcttaagagcatagtcccttcg 16639202  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 247 - 328
Target Start/End: Original strand, 13291079 - 13291161
Alignment:
Q  247 aagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcg 328  Q
    |||||||||||||||| | ||  |||||| ||||||||||||| ||| ||||| | |||||||||||||| ||||||||||||    
T  13291079 aagagtgttcttaagatcatagacccttctagatataatgtcccttcggaattgacaatggtcttaagagtataatcccttcg 13291161  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 377
Target Start/End: Complemental strand, 14105036 - 14104954
Alignment:
Q  294 gaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 377  Q
    ||||||| ||||||||||||| |||| |||||||||  ||| || ||||||| | ||||||||||||| |||| ||||||||||    
T  14105036 gaattaagaatggtcttaagaacatagtcccttcgg-taaatttcgtcccttcagaaataagagtattcttaagatcatagtcc 14104954  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 319
Target Start/End: Original strand, 41558643 - 41558738
Alignment:
Q  225 tttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaagagcata 319  Q
    ||||| |||||||||| ||||||||||||||| || || | || |||||| |||| |||| || |||||| |||||| |||| |||||||||||||    
T  41558643 tttttttgtcccgtcggatttaaagagtgttcatatgaccatagtccctttgagaaataacgtcccttcaaaattaaaaatgttcttaagagcata 41558738  T

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Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 376
Target Start/End: Original strand, 171358 - 171444
Alignment:
Q  288 ccttcagaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtc 376  Q
    ||||| ||||||| ||||||||||||| | || ||||||||  |||  |||||||||| | |||||||||||||||||| |||||||||    
T  171358 ccttcggaattaagaatggtcttaagaacgtagtcccttcgataaa--tttgtcccttcagaaataagagtatttttaagatcatagtc 171444  T

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Target: scaffold0555 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 4822 - 4756
Alignment:
Q  197 tgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaag 261  Q
    ||||||| | |||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||    
T  4822 tgttgacgagctattcttttcttctccctctttttttgtcccttcggatttaaagagtgttcttaag 4756  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 148757 - 148835
Alignment:
Q  197 tgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatccct 273  Q
    |||||||||||||||| |||| ||| |||  |||| |||||||||| | || |||||||||||||||| | ||||||||    
T  148757 tgttgacaaactattcttttcctctacctctttttctgtcccgtcggactttaagagtgttcttaagaccataatccct 148835  T

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Target: scaffold0182 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 328
Target Start/End: Original strand, 9450 - 9532
Alignment:
Q  247 aagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcg 328  Q
    |||||||||||||||| | || ||||||   | | |||||||| ||| ||||||| |||||||||||||||||| ||||||||    
T  9450 aagagtgttcttaagaccatagtcccttttcggtttaatgtccattcggaattaagaatggtcttaagagcatagtcccttcg 9532  T

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Target: scaffold0226 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 325
Target Start/End: Original strand, 5811 - 5943
Alignment:
Q  196 gtgttgacaaactattcatttcttctccctttttat--gtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 292  Q
    |||||||| | |||||| ||| |||||||| ||| |  ||||| ||| |||||||||||||| |||||  | || ||||||||   |||||||||| |||    
T  5811 gtgttgacgagctattctttttttctccctcttttttagtcccttcggatttaaagagtgtttttaaggccatagtcccttcggtttataatgtcccttc 5910  T
Q  293 agaattaataatggtcttaagagcataatccct 325  Q
      |||||| ||||||||||||| |||| |||||    
T  5911 gaaattaagaatggtcttaagaacatagtccct 5943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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