View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12826_high_4 (Length: 387)

Name: NF12826_high_4
Description: NF12826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12826_high_4
NF12826_high_4
[»] chr3 (15 HSPs)
chr3 (4-371)||(26653989-26654356)
chr3 (4-165)||(20007388-20007549)
chr3 (15-131)||(26647856-26647972)
chr3 (73-138)||(20033477-20033542)
chr3 (4-162)||(20015320-20015478)
chr3 (230-371)||(26648188-26648329)
chr3 (29-138)||(19951990-19952099)
chr3 (15-138)||(19839245-19839368)
chr3 (53-138)||(20035746-20035831)
chr3 (56-123)||(20006412-20006479)
chr3 (15-138)||(19956936-19957059)
chr3 (169-224)||(20015198-20015253)
chr3 (80-138)||(19832738-19832796)
chr3 (224-321)||(19813413-19813510)
chr3 (224-257)||(19952281-19952314)
[»] chr1 (2 HSPs)
chr1 (16-114)||(1718073-1718171)
chr1 (73-158)||(38483831-38483916)
[»] chr5 (3 HSPs)
chr5 (4-165)||(26354043-26354204)
chr5 (76-165)||(9815947-9816036)
chr5 (171-224)||(9816102-9816155)


Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 4 - 371
Target Start/End: Original strand, 26653989 - 26654356
Alignment:
Q  4 agagaagtgtgagttcaaggaaacctagagctcatgtagggaaagctagcaaaagtggtatcgattttagtgttccacctggatttcctcccaatattat 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |    
T  26653989 agagaagtgtgagttcaaggaaacctagagctcatgtagggaaagctagcaaaagtggtgtcgattttagtgttccacctggatttcctcccaatcttgt 26654088  T
Q  104 tgacactcttatttttggaaaattttgtgatgatgttcctgctgaaaattctgctcatgattttgtgaaatctaagcatttaattaaccaatgttcttca 203  Q
    |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26654089 tgacactcatatttatggaaaattttgtgctgatgttcctgctgaaaattctgctcatgattgtgtgaaatctaagcatttaattaaccaatgttcttca 26654188  T
Q  204 gcctctttagcagattatgaagattttgaaaagatattaccactgaaaaggccaattttagaagagaatgttgaactttccctaggggccttagaggatg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26654189 gcctctttagcagattatgaagattttgaaaagatattaccactgataaggccaattttagaagagaatgttgaactttccctaggggccttagaggatg 26654288  T
Q  304 attttgaagatgcaaatggaagaaaagaagcacggaagtctagtaacagagcctttttatctgagact 371  Q
    |||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||    
T  26654289 attttgaagatgcaaatggaagaaaagaagcatggaagtctaatgacagagcctttttatctgagact 26654356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 4 - 165
Target Start/End: Complemental strand, 20007549 - 20007388
Alignment:
Q  4 agagaagtgtgagttcaaggaaacctagagctcatgtagggaaagctagcaaaagtggtatcgattttagtgttccacctggatttcctcccaatattat 103  Q
    |||||||||  | |||||||| || |||| ||||||||||  || ||| || |||| | || ||| || |||||||||||||||||||||||||| || |    
T  20007549 agagaagtgcaatttcaaggagacatagatctcatgtaggacaatctaacagaagttggattgatgttggtgttccacctggatttcctcccaatcttgt 20007450  T
Q  104 tgacactcttatttttggaaaattttgtgatgatgttcctgctgaaaattctgctcatgatt 165  Q
    |||  ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20007449 tgatgctcttgtttttggaaaattttgtgatgatgttcctgctgaaaatcctgctcatgatt 20007388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 26647856 - 26647972
Alignment:
Q  15 agttcaaggaaacctagagctcatgtagggaaagctagcaaaagtggtatcgattttagtgttccacctggatttcctcccaatattattgacactctta 114  Q
    ||||||||||||| ||||| |  |||||| |||| || || ||||||||  ||| || ||||||| ||||| |||||||||||| || ||||||||||||    
T  26647856 agttcaaggaaacatagagtttgtgtaggaaaagataacataagtggtaatgatgttggtgttccccctggttttcctcccaatcttgttgacactctta 26647955  T
Q  115 tttttggaaaattttgt 131  Q
    |||||||||||||||||    
T  26647956 tttttggaaaattttgt 26647972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 20033542 - 20033477
Alignment:
Q  73 gtgttccacctggatttcctcccaatattattgacactcttatttttggaaaattttgtgatgatg 138  Q
    ||||| |||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||    
T  20033542 gtgttgcacctggatttcctcccaatcttgttgacactcttatgtttggaaaattttgtgatgatg 20033477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 20015478 - 20015320
Alignment:
Q  4 agagaagtgtgagttcaaggaaacctagagctcatgtagggaaagctagcaaaagtggtatcgattttagtgttccacctggatttcctcccaatattat 103  Q
    |||||||||  ||||||||||||| |||| ||||| |||| ||| ||| || |||  |||  ||| || |||||||||||||||||  ||||||| || |    
T  20015478 agagaagtgaaagttcaaggaaacatagacctcatctaggaaaaactaacagaagcagtaatgatgttggtgttccacctggattttgtcccaatcttgt 20015379  T
Q  104 tgacactcttatttttggaaaattttgtgatgatgttcctgctgaaaattctgctcatg 162  Q
    ||||  |||||  | |||||||||||| ||||||| |||||||| || |||||||||||    
T  20015378 tgaccttcttaagtatggaaaattttgcgatgatgctcctgctggaagttctgctcatg 20015320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 230 - 371
Target Start/End: Original strand, 26648188 - 26648329
Alignment:
Q  230 tgaaaagatattaccactgaaaaggccaattttagaagagaatgttgaactttccctaggggccttagaggatgattttgaagatgcaaatggaagaaaa 329  Q
    |||||||||||||||||||||||||||| ||| || ||| ||  ||||||||||  |||     || |||||||||| ||||||||||||||| || |||    
T  26648188 tgaaaagatattaccactgaaaaggccagtttcagtagataacattgaactttcaatagaaagtttggaggatgattctgaagatgcaaatgggagcaaa 26648287  T
Q  330 gaagcacggaagtctagtaacagagcctttttatctgagact 371  Q
     ||||| ||| ||||| | |||||| || |||||||||||||    
T  26648288 caagcaaggatgtctaatgacagagtctgtttatctgagact 26648329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 29 - 138
Target Start/End: Original strand, 19951990 - 19952099
Alignment:
Q  29 tagagctcatgtagggaaagctagcaaaagtggtatcgattttagtgttccacctggatttcctcccaatattattgacactcttatttttggaaaattt 128  Q
    |||| |||||||||| ||||||| || ||||||||  | | || |||||||||||||||||||| |||||  | |||| |||||| | |||||||| |||    
T  19951990 tagacctcatgtaggaaaagctaacataagtggtaatgttgttggtgttccacctggatttcctaccaattgtgttgaaactcttgtctttggaaatttt 19952089  T
Q  129 tgtgatgatg 138  Q
    ||||||||||    
T  19952090 tgtgatgatg 19952099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 19839245 - 19839368
Alignment:
Q  15 agttcaaggaaacctagagctcatgtagggaaagctagcaaaagtggtatcgattttagtgttccacctggatttcctcccaatattattgacactctta 114  Q
    ||||||||||| | |||| |||||||||| ||   || || ||||||||| ||  || |||||| |||||||||| |||||||| |  |||| |||||||    
T  19839245 agttcaaggaagcgtagacctcatgtaggaaagtttaacataagtggtattgaggtttgtgttcaacctggattttctcccaatctggttgatactctta 19839344  T
Q  115 tttttggaaaattttgtgatgatg 138  Q
     |||||||||| ||||||||||||    
T  19839345 cttttggaaaagtttgtgatgatg 19839368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 20035831 - 20035746
Alignment:
Q  53 caaaagtggtatcgattttagtgttccacctggatttcctcccaatattattgacactcttatttttggaaaattttgtgatgatg 138  Q
    |||||||||||| ||  || ||||||  ||||||||| |||||||| || |||| |||||||||||||||||  ||||||||||||    
T  20035831 caaaagtggtattgaagtttgtgttcagcctggattttctcccaatcttgttgatactcttatttttggaaatgtttgtgatgatg 20035746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 20006479 - 20006412
Alignment:
Q  56 aagtggtatcgattttagtgttccacctggatttcctcccaatattattgacactcttatttttggaa 123  Q
    ||||||||| ||| || ||||||||  |||||||||||||||| || ||| |||||||||||||||||    
T  20006479 aagtggtattgatgttggtgttccagatggatttcctcccaatcttgttggcactcttatttttggaa 20006412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 19956936 - 19957059
Alignment:
Q  15 agttcaaggaaacctagagctcatgtagggaaagctagcaaaagtggtatcgattttagtgttccacctggatttcctcccaatattattgacactctta 114  Q
    ||||||||||| | |||| |||| ||||| ||   || || ||||||||| ||  || |||||| |||||||||| |||||||| || |||| |||||||    
T  19956936 agttcaaggaagcgtagacctcacgtaggaaagtttaacagaagtggtatggaggtttgtgttcaacctggattttctcccaatcttgttgatactctta 19957035  T
Q  115 tttttggaaaattttgtgatgatg 138  Q
     ||||| |||  ||||||||||||    
T  19957036 cttttgaaaatgtttgtgatgatg 19957059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 20015253 - 20015198
Alignment:
Q  169 tgaaatctaagcatttaattaaccaatgttcttcagcctctttagcagattatgaa 224  Q
    ||||||||||||||||| | ||||| ||||||||| |||||||| |||||| ||||    
T  20015253 tgaaatctaagcatttagtcaaccattgttcttcatcctctttatcagattttgaa 20015198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 19832738 - 19832796
Alignment:
Q  80 acctggatttcctcccaatattattgacactcttatttttggaaaattttgtgatgatg 138  Q
    |||||||||| |||||||| || |||| |||| |||||||| |||| ||||||||||||    
T  19832738 acctggattttctcccaatcttgttgatactcctatttttgaaaaagtttgtgatgatg 19832796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 321
Target Start/End: Original strand, 19813413 - 19813510
Alignment:
Q  224 agattttgaaaagatattaccactgaaaaggccaattttagaagagaatgttgaactttccctaggggccttagaggatgattttgaagatgcaaatg 321  Q
    ||||| |||||| || |||||||||||||||||| ||| | |||| ||  ||||| ||||  ||||||  || |||||||| ||| ||||||||||||    
T  19813413 agattatgaaaatatgttaccactgaaaaggccactttcaaaagataacattgaattttcaataggggatttcgaggatgagtttaaagatgcaaatg 19813510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 19952281 - 19952314
Alignment:
Q  224 agattttgaaaagatattaccactgaaaaggcca 257  Q
    ||||| ||||||||||||||||||||||||||||    
T  19952281 agattatgaaaagatattaccactgaaaaggcca 19952314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 1718073 - 1718171
Alignment:
Q  16 gttcaaggaaacctagagctcatgtagggaaagctagcaaaagtggtatcgattttagtgttccacctggatttcctcccaatattattgacactctta 114  Q
    |||||| ||||||||||||| ||||||| ||||||| |||||||||||  ||| || |||||||||||||||||||||||||| || ||||||||||||    
T  1718073 gttcaacgaaacctagagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctta 1718171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 158
Target Start/End: Original strand, 38483831 - 38483916
Alignment:
Q  73 gtgttccacctggatttcctcccaatattattgacactcttatttttggaaaattttgtgatgatgttcctgctgaaaattctgct 158  Q
    |||||||||||| |||||||||  || || |||||  || || ||||  |||||| |||||||||||||||||||||| |||||||    
T  38483831 gtgttccacctgaatttcctccagatcttgttgaccttcctaattttttaaaattctgtgatgatgttcctgctgaaagttctgct 38483916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 165
Target Start/End: Complemental strand, 26354204 - 26354043
Alignment:
Q  4 agagaagtgtgagttcaaggaaacctagagctcatgtagggaaagctagcaaaagtggtatcgattttagtgttccacctggatttcctcccaatattat 103  Q
    |||||||||  || ||||||||||  ||||||||||| || ||| ||| || ||||  ||  ||| || |||||||||||||||||||||||||| || |    
T  26354204 agagaagtgaaagctcaaggaaacacagagctcatgttggaaaaactaacagaagtattaatgatgttggtgttccacctggatttcctcccaatcttgt 26354105  T
Q  104 tgacactcttatttttggaaaattttgtgatgatgttcctgctgaaaattctgctcatgatt 165  Q
    ||||| ||||| || |  ||| ||||||||||||||||||||||||| |||||| |||||||    
T  26354104 tgacattcttaattatcaaaatttttgtgatgatgttcctgctgaaatttctgcccatgatt 26354043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 9815947 - 9816036
Alignment:
Q  76 ttccacctggatttcctcccaatattattgacactcttatttttggaaaattttgtgatgatgttcctgctgaaaattctgctcatgatt 165  Q
    ||||||||| ||||||||||||| || |||||  ||||| | |||||||  |||||| ||||||||||||||||| ||||||| ||||||    
T  9815947 ttccacctgaatttcctcccaatcttgttgaccttcttaatgttggaaagctttgtgttgatgttcctgctgaaagttctgctgatgatt 9816036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 9816102 - 9816155
Alignment:
Q  171 aaatctaagcatttaattaaccaatgttcttcagcctctttagcagattatgaa 224  Q
    ||||||||| ||||||| |||||||||||| || ||||||||| ||||| ||||    
T  9816102 aaatctaagtatttaatcaaccaatgttctccatcctctttagaagattttgaa 9816155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University