View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12826_high_6 (Length: 352)
Name: NF12826_high_6
Description: NF12826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12826_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 33101978 - 33102292
Alignment:
| Q |
17 |
cattatgaaccatgatcatattttactaaaaatatctcctacaaaaataaatatt-atttataaattcatttgcttaaatcaacggtcctttaattataa |
115 |
Q |
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| T |
33101978 |
cattatgaaccatgatcatattttactaaaaatatctcctacaaaaataaatatttatttataaattcatttgcttaaatcaacggtcctttaattataa |
33102077 |
T |
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| Q |
116 |
tatcaatcatataataagagaaattgttgcttcaaaaagaatatagagcaccttacaaacttacaaaaatatagagaaattattgaatgagaacagataa |
215 |
Q |
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| T |
33102078 |
tatcaatcatataataagataaattgttgcttcaaaaagaatatagagcaccttaaaaa--------aatatagagaaattattgaatgagaacagataa |
33102169 |
T |
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| Q |
216 |
gttgtagtagtggagttgacttcttgaaatgagtgtgctgccaaactggctaacaaatggttttccttcatattcgcaaattggcagcgccgttattatg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33102170 |
gttgtagtagtggagttgacttcttgaaatgagtgtgctgccaaactggctaacaaatggttttccttcatattcgcaaattggcagcgccg---ttatg |
33102266 |
T |
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| Q |
316 |
tctgtccttacagaatcatcattcat |
341 |
Q |
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|||||||||||||||||||||||||| |
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| T |
33102267 |
tctgtccttacagaatcatcattcat |
33102292 |
T |
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