View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12826_low_1 (Length: 457)

Name: NF12826_low_1
Description: NF12826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12826_low_1
NF12826_low_1
[»] chr1 (4 HSPs)
chr1 (49-278)||(534877-535103)
chr1 (284-355)||(534746-534817)
chr1 (82-172)||(41198093-41198183)
chr1 (96-141)||(14462136-14462181)
[»] chr3 (3 HSPs)
chr3 (82-172)||(27166888-27166978)
chr3 (96-171)||(25706729-25706804)
chr3 (96-170)||(19636143-19636217)
[»] chr8 (2 HSPs)
chr8 (82-160)||(10182818-10182896)
chr8 (103-171)||(13471306-13471375)
[»] chr7 (1 HSPs)
chr7 (96-141)||(31279789-31279834)
[»] chr6 (1 HSPs)
chr6 (96-141)||(16704991-16705036)
[»] chr5 (2 HSPs)
chr5 (103-140)||(4986549-4986586)
chr5 (103-171)||(13521865-13521933)
[»] chr2 (2 HSPs)
chr2 (111-171)||(19968619-19968680)
chr2 (98-171)||(22596788-22596861)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 49 - 278
Target Start/End: Complemental strand, 535103 - 534877
Alignment:
Q  49 tatccaaattaaatcgtatacatttgaatcgagttttgttaaaacagtcatccgaaccgaaccaaaccgaacgtaatttttattttagatcggataactt 148  Q
    ||||||||||||| ||||||  ||| ||||||||||| |||||||||||||||||||| |||  || | ||||| ||||||||||||||| |||| ||||    
T  535103 tatccaaattaaaccgtata--tttaaatcgagttttattaaaacagtcatccgaaccaaactgaatcaaacgtgatttttattttagattggatgactt 535006  T
Q  149 tttgctttaaaatcgatccaaactacacaaaccacacctaacaattactaaaaactagtcaaattatctactagaataaataacttttgacagctgcaaa 248  Q
    ||| ||||||||||||| |||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  535005 tttactttaaaatcgatgcaaactccacaaac-acatctaacaattactaaaaactagtcaaattatctactagtataaataacttttgacagctgcaaa 534907  T
Q  249 tcaattcataaatatcaaacctttgtagga 278  Q
    ||||||||||||||||||||||||||||||    
T  534906 tcaattcataaatatcaaacctttgtagga 534877  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 534817 - 534746
Alignment:
Q  284 tatttgggatggtcactcaatagaccgttagattgctcacaggtccctcaacatatcggattgtaaatcccg 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  534817 tatttgggatggtcactcaatagaccgttagattgctcacaggtccctcaacatatcggattgtaactcccg 534746  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 41198183 - 41198093
Alignment:
Q  82 ttttgttaaaacagtcatccgaaccgaaccaaaccgaacgtaatttttattttagatcggataactttttgctttaaaatcgatccaaact 172  Q
    |||||||| || | |||||| ||||||||| ||||| | || ||||||||||| |||||| | || |||| | | ||||||||||||||||    
T  41198183 ttttgttagaatactcatccaaaccgaaccgaaccgcatgtgatttttattttggatcggttgacattttacctcaaaatcgatccaaact 41198093  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 14462136 - 14462181
Alignment:
Q  96 tcatccgaaccgaaccaaaccgaacgtaatttttattttagatcgg 141  Q
    |||||| ||||||||| ||||| |||||||||||||||| ||||||    
T  14462136 tcatccaaaccgaaccgaaccgcacgtaatttttattttggatcgg 14462181  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 27166978 - 27166888
Alignment:
Q  82 ttttgttaaaacagtcatccgaaccgaaccaaaccgaacgtaatttttattttagatcggataactttttgctttaaaatcgatccaaact 172  Q
    |||| |||||| |||||||| ||||||||| || || | |||||||||||||||||||||||||  ||||| || |||| |||| ||||||    
T  27166978 tttttttaaaatagtcatccaaaccgaaccgaatcggatgtaatttttattttagatcggataatattttgtttcaaaaccgatacaaact 27166888  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 25706729 - 25706804
Alignment:
Q  96 tcatccgaaccgaaccaaaccgaacgtaatttttattttagatcggataactttttgctttaaaatcgatccaaac 171  Q
    |||||| ||||||||| ||||| || | |||||||||||||||||| | ||||||  | | |||||||||||||||    
T  25706729 tcatccaaaccgaaccgaaccgcacatgatttttattttagatcggttcacttttcccctcaaaatcgatccaaac 25706804  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 19636217 - 19636143
Alignment:
Q  96 tcatccgaaccgaaccaaaccgaacgtaatttttattttagatcggataactttttgctttaaaatcgatccaaa 170  Q
    |||||| ||||||||| ||||| |||| ||||||||||| |||||| ||| ||||| | | |||| |||||||||    
T  19636217 tcatccaaaccgaaccgaaccgcacgtgatttttattttggatcggttaattttttacctcaaaaccgatccaaa 19636143  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 10182896 - 10182818
Alignment:
Q  82 ttttgttaaaacagtcatccgaaccgaaccaaaccgaacgtaatttttattttagatcggataactttttgctttaaaa 160  Q
    |||| |||||| |||||||| ||||||||| ||||| | || ||||||||||| |||||||| || |||||| ||||||    
T  10182896 tttttttaaaatagtcatccaaaccgaaccgaaccgcatgtgatttttattttggatcggatgacgttttgccttaaaa 10182818  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 13471306 - 13471375
Alignment:
Q  103 aaccgaaccaaaccgaacgtaatttttattttagatcggat-aactttttgctttaaaatcgatccaaac 171  Q
    ||||||||| ||||| |||| ||||||||||| |||||| | |  ||||| |||||||||||||||||||    
T  13471306 aaccgaaccgaaccgcacgtgatttttattttggatcggttgagttttttactttaaaatcgatccaaac 13471375  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 31279834 - 31279789
Alignment:
Q  96 tcatccgaaccgaaccaaaccgaacgtaatttttattttagatcgg 141  Q
    |||||| |||||||| |||||| | |||||||||||||||||||||    
T  31279834 tcatccaaaccgaacaaaaccgcatgtaatttttattttagatcgg 31279789  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 16705036 - 16704991
Alignment:
Q  96 tcatccgaaccgaaccaaaccgaacgtaatttttattttagatcgg 141  Q
    |||||| ||||||||||||||| |||| ||||||||||| ||||||    
T  16705036 tcatccaaaccgaaccaaaccgcacgtgatttttattttggatcgg 16704991  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 4986549 - 4986586
Alignment:
Q  103 aaccgaaccaaaccgaacgtaatttttattttagatcg 140  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  4986549 aaccgaaccaaaccgcatgtaatttttattttagatcg 4986586  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 13521865 - 13521933
Alignment:
Q  103 aaccgaaccaaaccgaacgtaatttttattttagatcggataactttttgctttaaaatcgatccaaac 171  Q
    ||||||||| ||||| || ||||||||||||| |||||| | | ||||| | | |||||||||||||||    
T  13521865 aaccgaaccgaaccgcacataatttttattttggatcggttgattttttacctcaaaatcgatccaaac 13521933  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 19968619 - 19968680
Alignment:
Q  111 caaaccgaac-gtaatttttattttagatcggataactttttgctttaaaatcgatccaaac 171  Q
    |||||||||| || ||||||||||| ||| |||||||||||||| | |||| ||||||||||    
T  19968619 caaaccgaaccgtgatttttattttggattggataactttttgcctcaaaaccgatccaaac 19968680  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 22596788 - 22596861
Alignment:
Q  98 atccgaaccgaaccaaaccgaacgtaatttttattttagatcggataactttttgctttaaaatcgatccaaac 171  Q
    |||| ||||||||  ||||| || |||||||||||||||||||| | || |||||| | |||| ||||||||||    
T  22596788 atccaaaccgaactgaaccgcacataatttttattttagatcggttgacgttttgcctcaaaaccgatccaaac 22596861  T

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