View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12826_low_12 (Length: 253)
Name: NF12826_low_12
Description: NF12826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12826_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 35366162 - 35366383
Alignment:
| Q |
18 |
gtatctatatgaaaacaagttgtccggcgaaatcccaaatgacctcggtgcttgttttacattaacaaagcttgtgttgaagaacaactttttccatgga |
117 |
Q |
| |
|
||||||| |||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35366162 |
gtatctaaatgaaaacaagttgtctggtgaaatcccaaatgacctaggtgcttgttttacattaacaaagcttgtgttgaagaacaactttttccatgga |
35366261 |
T |
|
| Q |
118 |
ggtataccttcattcttgggttctttaagatctttagaaatattagacatttctaataacagtttctcaagtacaataccctttgaactagaaaatctca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35366262 |
ggtataccttcattcttgggttctttaagatctttagaaatattagacatttctaataacagtttctcaagtacaataccctttgaactagaaaatctca |
35366361 |
T |
|
| Q |
218 |
cacttttaaatactttgaacct |
239 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
35366362 |
cacttttaaatactttgaacct |
35366383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 213
Target Start/End: Original strand, 35422968 - 35423159
Alignment:
| Q |
22 |
ctatatgaaaacaagttgtccggcgaaatcccaaatgacctcggtgcttgttttacattaacaaagcttgtgttgaagaacaactttttccatggaggta |
121 |
Q |
| |
|
|||||||||||||||||||| || ||||| || | |||||| || ||||||| |||||||| ||||| | || ||| |||||||||||||| ||| |
|
|
| T |
35422968 |
ctatatgaaaacaagttgtctggtgaaattccgagtgaccttggcacttgtttatcattaacagagcttatactggagagaaactttttccatggcagta |
35423067 |
T |
|
| Q |
122 |
taccttcattcttgggttctttaagatctttagaaatattagacatttctaataacagtttctcaagtacaataccctttgaactagaaaat |
213 |
Q |
| |
|
|||||| |||||||| || |||||||| ||||| | ||||||||||| ||||| ||||| ||||| ||||| ||| |||||||||||||| |
|
|
| T |
35423068 |
taccttggttcttgggatcattaagatccctagaagtcttagacatttcaaataatagtttttcaagcacaatcccccttgaactagaaaat |
35423159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 35754177 - 35754245
Alignment:
| Q |
79 |
ttaacaaagcttgtgttgaagaacaactttttccatggaggtataccttcattcttgggttctttaaga |
147 |
Q |
| |
|
|||||| ||||| ||||| || | |||||||||||||||| ||||||||| |||||||| ||||||||| |
|
|
| T |
35754177 |
ttaacagagcttttgttggaggaaaactttttccatggagatataccttcgttcttgggctctttaaga |
35754245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 137
Target Start/End: Original strand, 35436324 - 35436431
Alignment:
| Q |
30 |
aaacaagttgtccggcgaaatcccaaatgacctcggtgcttgttttacattaacaaagcttgtgttgaagaacaactttttccatggaggtataccttca |
129 |
Q |
| |
|
||||||||||||||| |||| || ||||| || | || |||||| ||| ||| ||||| ||||| ||| ||||||||||||||| |||||||||| |
|
|
| T |
35436324 |
aaacaagttgtccggtcaaattcccaatgaacttgctggttgtttgacactaattgagcttatgttgcagagaaactttttccatggaagtataccttcc |
35436423 |
T |
|
| Q |
130 |
ttcttggg |
137 |
Q |
| |
|
|||||||| |
|
|
| T |
35436424 |
ttcttggg |
35436431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 89 - 236
Target Start/End: Complemental strand, 10421390 - 10421243
Alignment:
| Q |
89 |
ttgtgttgaagaacaactttttccatggaggtataccttcattcttgggttctttaagatctttagaaatattagacatttctaataacagtttctcaag |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
10421390 |
ttgtgttgaagaacaactttttccatggagttataccttcattcttgggttctttaagatctctagaaatattagacatgtctaataacagtctctcaag |
10421291 |
T |
|
| Q |
189 |
tacaataccctttgaactagaaaatctcacacttttaaatactttgaa |
236 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10421290 |
tacaataccctatgaactagaaaatctcacacttttaaatactttgaa |
10421243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 29623927 - 29623793
Alignment:
| Q |
103 |
aactttttccatggaggtataccttcattcttgggttctttaagatctttagaaatattagacatttctaataacagtttctcaagtacaataccctttg |
202 |
Q |
| |
|
||||| || |||||| |||||||||| |||||||| ||||||||||| || ||||| |||||||||||||| || ||||||||||||||||| || |||| |
|
|
| T |
29623927 |
aacttcttgcatggaagtataccttcgttcttgggctctttaagatccttggaaatcttagacatttctaacaatagtttctcaagtacaatcccttttg |
29623828 |
T |
|
| Q |
203 |
aactagaaaatctcacacttttaaatactttgaac |
237 |
Q |
| |
|
|||||||||| || | | |||| || ||||||||| |
|
|
| T |
29623827 |
aactagaaaaactaagatttttgaagactttgaac |
29623793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University