View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12826_low_16 (Length: 241)
Name: NF12826_low_16
Description: NF12826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12826_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 44959094 - 44959017
Alignment:
| Q |
66 |
catctctctttctgggccacaacaaagctcgtgcggtaaaaggaatgaaacagtgtgttaccctaagactatactata |
143 |
Q |
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| T |
44959094 |
catctctctttctgggccacaacaaagctcgtgcggtaaaaggaatgaaacagtgtgttaccctaagactatactata |
44959017 |
T |
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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 44959001 - 44958935
Alignment:
| Q |
165 |
tgtactagaactactattagtaagtgaagtgaagtgaagtgaagtgtgttaaataatgtaaatttacattgcttttt |
241 |
Q |
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| T |
44959001 |
tgtactagaactactattagtaagtgaagtgaagtg----------tgttaaataatgtaaatttacattgcttttt |
44958935 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 31846128 - 31846166
Alignment:
| Q |
201 |
aagtgaagtgtgttaaataatgtaaatttacattgcttt |
239 |
Q |
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| T |
31846128 |
aagtgaaatgtgttaaataatgtaaatttacattgcttt |
31846166 |
T |
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