View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12826_low_17 (Length: 238)
Name: NF12826_low_17
Description: NF12826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12826_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 10922540 - 10922706
Alignment:
| Q |
17 |
agtatacgtatgctggcgtgcaagaaaagctttacaaggattcaaacaaaaccatagattgagatatgccggcattttttcctcgttaaatcaaagccgg |
116 |
Q |
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| T |
10922540 |
agtattcgtatgccggcgtgcaagaaaagctttacaaggattcaaacaaaactatagattgagatatgcgggcattttttcctcgttaaatcaaagccgg |
10922639 |
T |
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| Q |
117 |
ccacgttcattgcagtgatcgtaacatgaatgtcttattataagtgttttctatgtgttaatgttat |
183 |
Q |
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| T |
10922640 |
ccacgttcattgcagtgatcgtaacatgaatgtcttattataagtgttttctatgtgttaatgttat |
10922706 |
T |
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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 10935174 - 10935221
Alignment:
| Q |
180 |
ttataacattttaaagattacatatgcttctacaaatatttccttcat |
227 |
Q |
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| T |
10935174 |
ttataacattttaaagattacatatgcttctacaaatatttccttcat |
10935221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 45407567 - 45407654
Alignment:
| Q |
78 |
agatatgccggcat-tttttcctcgttaaatcaaagccggccacgttcattgcagtgatcgtaacatgaatgtcttattataagtgtt |
164 |
Q |
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| T |
45407567 |
agatatgccggcatatttttcctaattagatcaaagccggccatgttcattgcagtaatcgtaacatgaatgtcttattataagtgtt |
45407654 |
T |
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