View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12826_low_19 (Length: 227)
Name: NF12826_low_19
Description: NF12826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12826_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 4731671 - 4731865
Alignment:
| Q |
15 |
cacagaacgacagagaggatatttacaccttggtacatgaggatacatacaactatgatgtttacaatcagtatttcccacgcaccttgtggttgctata |
114 |
Q |
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| T |
4731671 |
cacacaacgacagagaggatatttacaccttggtacaagaggatacatacaaatatgatgtctacaatcagaatttcgcacgcaccttgtggttgctata |
4731770 |
T |
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| Q |
115 |
atataaaaaataagaaacaaatattaatgtaagggatgaaatattttgtatttaagataaacaagaaagttaaaaaagatacggatatggcttac |
209 |
Q |
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| T |
4731771 |
atataaaaaataagaaacaaatattaatgtaagggatgaaatattttgtatttaagataaacaagaaagttaaaaaaaatacgtatatggcttac |
4731865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 4734663 - 4734759
Alignment:
| Q |
96 |
gcaccttgtggttgctataatataaaaaataagaaacaaatattaatgtaagggatgaaatattttgtatttaagataaacaagaaagttaaaaaagata |
195 |
Q |
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| T |
4734663 |
gcactttgtggttgctgtaatataaaaaataataaa----tatgactgtaagggatgtaatattttgtttaaaagataaacaagaaagttaaaaaagata |
4734758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 4752139 - 4752219
Alignment:
| Q |
126 |
aagaaacaaatattaatgtaagggatgaaatattttgtatttaagataaacaagaaagttaaaaaagatacggatatggcttac |
209 |
Q |
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| T |
4752139 |
aagaaacaaatattaaag---gggatgaaatattttgtatataagatgaacaagaaagttcaaaaggataaagaaatggcttac |
4752219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 4740145 - 4740201
Alignment:
| Q |
153 |
aaatattttgtatttaagataaacaagaaagttaaaaaagatacggatatggcttac |
209 |
Q |
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| T |
4740145 |
aaatattttgtatataagataaacaagaaagtttaaaaggatatggaaatggcttac |
4740201 |
T |
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