View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12826_low_2 (Length: 414)
Name: NF12826_low_2
Description: NF12826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12826_low_2 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 46 - 414
Target Start/End: Original strand, 28104061 - 28104429
Alignment:
| Q |
46 |
tgctgcaacagtttgtgttattcgagtcagtggtgttctgctgtatttctttttgcgttttgctgccttggtttattttcctggtcactccaaatccttt |
145 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28104061 |
tgctgcatcagtttgtgttattcgagtcagtggtgttctgctgtatttctttttgcgttttgctgccttggtttattttcctggtcactccaaatccttt |
28104160 |
T |
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| Q |
146 |
tggacggttgtgccaattttgtttttgagcggtggtgtggtgtgttggcaggtttggctatgaacggtggtttttggtcagcagattttgtactgcacag |
245 |
Q |
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| T |
28104161 |
tggacggttgtgccagttttgtttttgagcggtggtgtggtgtgttggcaggtttggctatgaacggtggtttttggtcagcagattttgtactgcacag |
28104260 |
T |
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| Q |
246 |
tggctttttgttcctgctgcaattcattttatggctgctatattttttgctacggttttgtgacttctgcagagctttgttctgttagtatttagctttt |
345 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28104261 |
tggctttttgttcttgctgcaattcattttatggctgctatattttttgctacggttttgtgacttctgcagagctttgttctgttagtatttagctttt |
28104360 |
T |
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| Q |
346 |
gatgcctttttgtggcttagtgttattaggctttgtttttggctttggggaaatttcgcttgttgttct |
414 |
Q |
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| T |
28104361 |
gatgcctttttgtggcttagtgttattaggctttgtttttggctgtggggaaatttcgcttgttgttct |
28104429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 46 - 414
Target Start/End: Original strand, 26640987 - 26641352
Alignment:
| Q |
46 |
tgctgcaacagtttgtgttattcgagtcagtggtgttctgctgtatttctttttgcgttttgctgccttggtttattttcctggtcactccaaatccttt |
145 |
Q |
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| T |
26640987 |
tgctgcatcagtttgtattatttgagtcagtggtgttctgttgcatta-tttttgtgtt---ctgccttggtttattgtcctggtcactccaaatccgtt |
26641082 |
T |
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| Q |
146 |
tggacggttgtgccaattttgtttttgagcggtggtgtggtgtgttggcaggtttggctatgaacggtggtttttgg-tcagcagattttgtactgcaca |
244 |
Q |
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| T |
26641083 |
tggactgttgtgccagttttgattttgagcggtggtgtggtgcgttggcaggtttggctttaagtggtggtttttcgatctgcagattttgtaccgcata |
26641182 |
T |
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| Q |
245 |
gtggctttttgttcctgctgcaattcattttatggctgctatattttttgctacggttttgtgacttctgcagagctttgttctgttagtatttagcttt |
344 |
Q |
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| T |
26641183 |
gtggctttttgtacttgctgcaatgcattctaaggctgctatatttggttctacagttttgtgacttctgctgagctttgttccgttagtatttagcttc |
26641282 |
T |
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| Q |
345 |
tgatgcctttttgtggcttagtgttattaggctttgtttttggctttggggaaatttcgcttgttgttct |
414 |
Q |
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| T |
26641283 |
tgatgcttttctgtggcttagtattattaggctttgtttttggctttggggcaatttccgttgttgttct |
26641352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 28101304 - 28101377
Alignment:
| Q |
48 |
ctgcaacagtttgtgttattcgagtcagtggtgttctgctgtatttctttttgcgttttgctgccttggtttatt |
122 |
Q |
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||||||| |||||| ||||||||||| |||||||||||||| | || ||||||| || | |||||||||||||| |
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| T |
28101304 |
ctgcaactgtttgtattattcgagtctgtggtgttctgctgca-ttgtttttgcattctaatgccttggtttatt |
28101377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 28103279 - 28103308
Alignment:
| Q |
18 |
acatgtggtgtgatgtcggtgataagaatg |
47 |
Q |
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| T |
28103279 |
acatgtggtgtgatgtcggtgataagaatg |
28103308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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