View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12827_high_1 (Length: 322)
Name: NF12827_high_1
Description: NF12827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12827_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 87 - 309
Target Start/End: Original strand, 2263553 - 2263775
Alignment:
| Q |
87 |
gggttatgatcatagaaaactttcaatacaatgtgcccacaaaaaacacataaagggtcacaactagctccttttttaaacagagtagtttttaagcagt |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2263553 |
gggttatgatcatagaaaactttcaatacaatgtgcccacaaaaaacacataaagggtgacaactagctccttttttaaacagagtagtttttaagcagt |
2263652 |
T |
|
| Q |
187 |
atcttgaacttcgaatatgacaaacataaatgaatnnnnnnnccttgatatttaaaaagaaatggagaaaactattatcgtcgttaataaatgcaataga |
286 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2263653 |
atcttgaacttcgaatatgacaaacataaatgaataaaaaaaccttgatatttaaaaagaaatggagaaaactattatcgtcgttaataaatgcaataga |
2263752 |
T |
|
| Q |
287 |
aaatgaacctggttttttcagtg |
309 |
Q |
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|||||||||||||||||| |||| |
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| T |
2263753 |
aaatgaacctggtttttttagtg |
2263775 |
T |
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