View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12827_low_1 (Length: 514)
Name: NF12827_low_1
Description: NF12827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12827_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 459; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 8 - 499
Target Start/End: Complemental strand, 1414512 - 1414021
Alignment:
| Q |
8 |
atgagatggacatcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtat |
107 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1414512 |
atgagacggccatcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtat |
1414413 |
T |
|
| Q |
108 |
ctgaatttgagtcaccaaagttataaattgcagggtacacacatttgtcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1414412 |
ctgaatttgagtcaccaaagttataaattgcagggtacacacatttgtcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaag |
1414313 |
T |
|
| Q |
208 |
tacatgaattaacctcatgaaattcatgaggctaattcatagaaattttaagttgtacactaatatataaacaacgacaattttgtcaaaacgtaaattt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1414312 |
tacatgaattaacctcatgaaattcatgaggctaattcatagaaattttaagttgtacactaatatataaacaatgacaattttgtcaaaacgtaaattt |
1414213 |
T |
|
| Q |
308 |
gacataatgtgtttcatgctgtatttacggatcatgctagaatgctttgggacaccatgcttttggatcaaacacttgtgagnnnnnnntgcctaacaat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1414212 |
gacataatgtgtttcatgctgtatttacggatcatgctagaatgctttgggacaccatgcttttggatcaaacacttgtgagaaaaaaatgcctaacaat |
1414113 |
T |
|
| Q |
408 |
agctttgagacacgtgttggataaaaagacagagagatgggattgacacaaacattagacaatggtaatcttttttacggtactaatgatgt |
499 |
Q |
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| T |
1414112 |
agctttgagacacgtgttggataaaaagacagagagatgggattgacacaaacattagacaatggtaatcttttttacggtactaatgatgt |
1414021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 1420058 - 1419822
Alignment:
| Q |
8 |
atgagatggacatcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtat |
107 |
Q |
| |
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|||||| || ||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| || | | ||||||||| ||||||||||| |
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| T |
1420058 |
atgagacggccatcagaagctctccctgatatgtttccaaag---cttatgccattaggaggttgattacataagaaagttgcatatgcagttccagtat |
1419962 |
T |
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| Q |
108 |
ctgaatttgagtcaccaaagttataaattgcagggtacacacatttgtcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaag |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1419961 |
ctgaatttgagtcaccaaagttataaattgcagggtacacacattcatgacttgaaacttgaataaatgtacatgtcacatacaggttgaaacaccaaag |
1419862 |
T |
|
| Q |
208 |
tacatgaattaacctcatgaaattcatgaggctaattcat |
247 |
Q |
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| T |
1419861 |
tacatgaattaacctcatagaattcatgaggctaattcat |
1419822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 1411136 - 1410990
Alignment:
| Q |
8 |
atgagatggacatcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtat |
107 |
Q |
| |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| |||||||||||| |||||| |||| |
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| T |
1411136 |
atgagacggccatcagaagctcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtaaatgttgcatatacagttccggtat |
1411037 |
T |
|
| Q |
108 |
ctgaatttgagtcaccaaagttataaattgcagggtacacacatttg |
154 |
Q |
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| T |
1411036 |
ccgaatttgaatcaccaaagttataaattgcagggtacacacatttg |
1410990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 1408244 - 1408109
Alignment:
| Q |
18 |
catcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtatctgaatttga |
117 |
Q |
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|||||||||||||||||| || |||||||| ||||||| ||||||||||| |||| ||| ||| |||||| | | |||||||||||||||||| |
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| T |
1408244 |
catcagaagctcttcctgtggtgcttccaaagtagcttataccattaggaggcgtaacagctgtgtatattgcatttgctgctccagtatctgaatttga |
1408145 |
T |
|
| Q |
118 |
gtcaccaaagttataaattgcagggtacacacattt |
153 |
Q |
| |
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||||||||| || ||||||||||||||| ||||||| |
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| T |
1408144 |
gtcaccaaaattgtaaattgcagggtactcacattt |
1408109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 1410965 - 1410884
Alignment:
| Q |
155 |
tcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaagtacatgaattaacctcatgaaattcatga |
236 |
Q |
| |
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|||||||| |||||||||||| |||||| |||||| || |||||||||||||||| |||||||| |||||| ||||||||| |
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| T |
1410965 |
tcacttgagacttgaataaatgtacatgccacataaagattgaaacaccaaagtatatgaattagcctcatagaattcatga |
1410884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 1408080 - 1408010
Alignment:
| Q |
164 |
acttgaataaatttacatgtcacatacaggttgaaacaccaaagtacatgaattaacctcatgaaattcat |
234 |
Q |
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|||||||| ||| || |||||||| |||| |||||| ||||||||||||||||||| ||||| ||||||| |
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| T |
1408080 |
acttgaatgaatgtaaatgtcacacacagattgaaaaaccaaagtacatgaattaatctcatagaattcat |
1408010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 3600632 - 3600507
Alignment:
| Q |
28 |
tcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtatctgaatttgagtcaccaaag |
127 |
Q |
| |
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||||||||| ||| |||||||||||||||| ||||||||| | | |||| || |||||||||| || ||||||||||||||| |||||||||||| |
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| T |
3600632 |
tcttcctgagatgcttccaaagaagcttataccattaggatgctcaacagctgccattgttgcatatccagctccagtatctgaattggagtcaccaaag |
3600533 |
T |
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| Q |
128 |
ttataaattgcagggtacacacattt |
153 |
Q |
| |
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|| || ||||| ||||| |||||||| |
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| T |
3600532 |
ttgtatattgctgggtagacacattt |
3600507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 14339499 - 14339374
Alignment:
| Q |
28 |
tcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtatctgaatttgagtcaccaaag |
127 |
Q |
| |
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||||||||| ||| |||||||||||||||| ||||||||| | |||| || |||||||||| || ||||||||||||||| |||||||||||| |
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| T |
14339499 |
tcttcctgagatgcttccaaagaagcttataccattaggatactcaacagctgccgttgttgcatatccagctccagtatctgaattggagtcaccaaag |
14339400 |
T |
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| Q |
128 |
ttataaattgcagggtacacacattt |
153 |
Q |
| |
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|| || ||||| ||||| |||||||| |
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|
| T |
14339399 |
ttgtatattgctgggtagacacattt |
14339374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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