View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12828_low_1 (Length: 552)
Name: NF12828_low_1
Description: NF12828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12828_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 17 - 536
Target Start/End: Complemental strand, 488294 - 487775
Alignment:
| Q |
17 |
cagagatctagcagctaatgattgcagtaggtgtctactaagtgctattggagatataccaggttgctgttatgcctccattggtgcgagagttatgagt |
116 |
Q |
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| T |
488294 |
cagagatctagcagctaatgattgcagtaggtgtctactaagtgctattggagatataccaggttgctgttatgcctccattggtgcgagagttatgagt |
488195 |
T |
|
| Q |
117 |
cgtagctgttatctgagatatgaattctatccattttatcttggtgaaaaagaacaaacaaagtcttctaccaacctaggagggaaaagtaagcatttct |
216 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
488194 |
cgcagctgttatctgagatatgaattctatccattttatcttggtgaaaaagaacaaacaaagtcttctaccaacctaggagggaaaagtaagcatttct |
488095 |
T |
|
| Q |
217 |
caagttgcaatacaattcttaaacattctgtcaaagctagttttgattgatcttttgtgcagataattcaagcaaaatatggatgattacagtcattgca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
488094 |
caagttgcaatacaattcttaaacattctgtcaaagctagttttgattgatcttttgtgcagataattcaagcaaaatatggatgattacagtcattgca |
487995 |
T |
|
| Q |
317 |
gttggggtaggcttggtcataataattttcatttgctacttgtgctttctcagaaatcggcaaagtaagttgtttggagattgtatatcagtgtttttca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
487994 |
gttggggtaggcttggtcataataattttcatttgctacttgtgctttctcagaaatcggcaaagtaagttgtttggagattgtatatcagtgtttttca |
487895 |
T |
|
| Q |
417 |
tttattttatggtatatattgtagcaccaatactttgaattgaaagtgtttctggtgtccgactcctacaagtgtgagtgtctgtgttagtagtttctaa |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
487894 |
tttattttatggtatatattgtagcaccaatactttgaattgaaagtgtttctggtgtccgactcctacaagtgtgagtgtctgtcttagtagtttctaa |
487795 |
T |
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| Q |
517 |
tttatttggttcttgtgttt |
536 |
Q |
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|||||||||||||||||||| |
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| T |
487794 |
tttatttggttcttgtgttt |
487775 |
T |
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