View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12828_low_2 (Length: 492)
Name: NF12828_low_2
Description: NF12828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12828_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 4 - 490
Target Start/End: Original strand, 52646381 - 52646867
Alignment:
| Q |
4 |
catttgacatcaatgttttgatgtgaaaaaattatttctctttctagattgagaacgaatacggaccagagagcagggcaacaggagctgctggtcatgc |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52646381 |
catttgacatcaatgttttgatgtgaaaaaattatttctctttctagattgagaacgaatacggaccagagagcagggcaacaggagctgctggtcatgc |
52646480 |
T |
|
| Q |
104 |
atacctaaactgggctgcaaatatggctgttggattgggaacaggagtcccttgggtgatgtgcaaggaaaatgatgccccagatcctgtggtgagctct |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52646481 |
atacctaaactgggctgcaaatatggctgttggattgggaacaggagtcccttgggtgatgtgcaaggaaaatgatgccccagatcctgtggtgagctct |
52646580 |
T |
|
| Q |
204 |
ttcattctcttggttaactcattcgctttagctgtcacacttaagggcgattgattgagttcaagaattgaaattatcgagtctcaagctctatatttag |
303 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52646581 |
ttcattctcttggttaactcatttgcttcagctgtcacacttaagggcgattgattgagttcaagaattgaaattatcgagtctcaagctctatatttag |
52646680 |
T |
|
| Q |
304 |
gctcaccatcattatatacttattgagggttgaatatgatccatccaattctccactacagattaattcatgtaatggtttttactgtgatgatttctct |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52646681 |
gctcaccatcattatatacttattgagggttgaatatgatccatccaattctccactacagattaattcatgtaatggtttttactgtgatgatttctct |
52646780 |
T |
|
| Q |
404 |
ccaaatacaccatataagcctagcatgtggactgagtcttggagtggctggtaagctatatattgttatgatgttagatataattgt |
490 |
Q |
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| T |
52646781 |
ccaaataaaccatataagcctagcatgtggaccgagtcttggagtggctggtaagctatatattgttctgatgttagatataattgt |
52646867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 7345272 - 7345384
Alignment:
| Q |
87 |
ggagctgctggtcatgcatacctaaactgggctgcaaatatggctgttggattgggaacaggagtcccttgggtgatgtgcaaggaaaatgatgccccag |
186 |
Q |
| |
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|||||| |||||||||||||| ||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||| |||||| |||||||||||| |
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| T |
7345272 |
ggagcttctggtcatgcatactcaaactgggctgcaaaaatggctgttggattaggtacaggtgtcccttgggtgatgtgtaaggaagatgatgccccag |
7345371 |
T |
|
| Q |
187 |
atcctgtggtgag |
199 |
Q |
| |
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|||| |||||||| |
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| T |
7345372 |
atccagtggtgag |
7345384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 338 - 458
Target Start/End: Original strand, 7345584 - 7345704
Alignment:
| Q |
338 |
tatgatccatccaattctccactacagattaattcatgtaatggtttttactgtgatgatttctctccaaatacaccatataagcctagcatgtggactg |
437 |
Q |
| |
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|||||||||||||||| | |||||||| ||| | || ||||||||||||||||||||||||||||| |||| |||||| ||||||| | ||||||| |
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| T |
7345584 |
tatgatccatccaattttttcctacagataaatgcttgcaatggtttttactgtgatgatttctctcccaataaaccatacaagcctaaactatggactg |
7345683 |
T |
|
| Q |
438 |
agtcttggagtggctggtaag |
458 |
Q |
| |
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||||||||||||| ||||||| |
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| T |
7345684 |
agtcttggagtggttggtaag |
7345704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 8141341 - 8141258
Alignment:
| Q |
113 |
ctgggctgcaaatatggctgttggattgggaacaggagtcccttgggtgatgtgcaaggaaaatgatgccccagatcctgtggt |
196 |
Q |
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||||||||| || |||||||||| | ||||||| || || || ||| | |||||||||||| ||||||| |||||||| ||||| |
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| T |
8141341 |
ctgggctgcgaaaatggctgttgaaatgggaactggggttccatggattatgtgcaaggaagatgatgctccagatccagtggt |
8141258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 410
Target Start/End: Original strand, 5452480 - 5452528
Alignment:
| Q |
362 |
cagattaattcatgtaatggtttttactgtgatgatttctctccaaata |
410 |
Q |
| |
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||||||||| | ||||||||||| || |||||| ||||||||||||||| |
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| T |
5452480 |
cagattaatacttgtaatggtttctattgtgattatttctctccaaata |
5452528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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