View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12828_low_3 (Length: 421)
Name: NF12828_low_3
Description: NF12828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12828_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 213 - 353
Target Start/End: Original strand, 7094602 - 7094743
Alignment:
| Q |
213 |
gggttcatataccttcttctcttccattctctattttttcctcctagccacattggtctcatcttcccaattcatatctggtacattaa-tttttaatat |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7094602 |
gggttcatataccttcttctcttccattctctattttttcctcctagccacattggtctcatcttcccaattcatatctggtacattaattttttaatat |
7094701 |
T |
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| Q |
312 |
gatcaatcatgcatatttagatattcatgtttattaaaattg |
353 |
Q |
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| T |
7094702 |
gatcaatcatgcatatttagatattcatgtttattaaaattg |
7094743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 213 - 353
Target Start/End: Complemental strand, 8801693 - 8801551
Alignment:
| Q |
213 |
gggttcatataccttcttctcttccattctctatttttt-cctcctagccacattggtctcatcttcccaattcatatctggtacattaat-ttttaata |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8801693 |
gggttcatataccttcttctcttccattctctatttttttcctcctagccacattggtctcatcttcccaattcatatctggtacattaattttttaata |
8801594 |
T |
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| Q |
311 |
tgatcaatcatgcatatttagatattcatgtttattaaaattg |
353 |
Q |
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| T |
8801593 |
tgattaatcatgcatatttagatattcatgtttattaaaattg |
8801551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 7094399 - 7094508
Alignment:
| Q |
10 |
gcaaaggaaacatgcggagagccattaaaacattgccaaatctaacaaacaatccaatttcatttccaccacaattcatgcaatgtcaccctcttccctt |
109 |
Q |
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| T |
7094399 |
gcaaaggaaacatgcggagagccattaaaacattgccaaatctaacaaacaatccaatttcatttccaccacaattcatgcaatgtcaccatcttccctt |
7094498 |
T |
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| Q |
110 |
tcatctctcc |
119 |
Q |
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|||||||||| |
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| T |
7094499 |
tcatctctcc |
7094508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 8801898 - 8801787
Alignment:
| Q |
9 |
agcaaaggaaacatgcggagagccattaaaacattgccaaatctaacaaacaatcc-aatttcatttccaccacaattcatgcaatgtcaccctcttccc |
107 |
Q |
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| T |
8801898 |
agcaaaggaaacatgcggagagccattaaaacattgccaaatctaacaaacaatccaaatttcatttccaccacaattcatgcaatgtcaccctcttccc |
8801799 |
T |
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| Q |
108 |
tttcatctctcc |
119 |
Q |
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|||||||||||| |
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| T |
8801798 |
tttcatctctcc |
8801787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 215 - 304
Target Start/End: Original strand, 3014015 - 3014104
Alignment:
| Q |
215 |
gttcatataccttcttctcttccattctctattttttcctcctagccacattggtctcatcttcccaattcatatctggtacattaattt |
304 |
Q |
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| T |
3014015 |
gttcatataccttcttctcttccattctctattttttgctcctagccacattggtctcatcttccccattcataactggtacattaattt |
3014104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 3013846 - 3013921
Alignment:
| Q |
13 |
aaggaaacatgcggagagccattaaaacattgccaaatctaacaaacaatccaatttcatttccaccacaattcat |
88 |
Q |
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| T |
3013846 |
aaggtaacatgcggagagccattaaaacattggcatatccaacaaacaatctaatttcatttccaccacaattcat |
3013921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 353
Target Start/End: Original strand, 3014148 - 3014191
Alignment:
| Q |
310 |
atgatcaatcatgcatatttagatattcatgtttattaaaattg |
353 |
Q |
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||||||||||||| |||||||||| ||||| ||||||||||||| |
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| T |
3014148 |
atgatcaatcatgaatatttagatgttcatatttattaaaattg |
3014191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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