View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12828_low_5 (Length: 241)

Name: NF12828_low_5
Description: NF12828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12828_low_5
NF12828_low_5
[»] chr7 (19 HSPs)
chr7 (18-225)||(26155453-26155660)
chr7 (21-225)||(26128817-26129036)
chr7 (80-215)||(26186502-26186637)
chr7 (19-225)||(26179333-26179554)
chr7 (18-216)||(26088041-26088254)
chr7 (18-216)||(26111829-26112042)
chr7 (86-225)||(19103305-19103444)
chr7 (85-222)||(26191518-26191655)
chr7 (94-225)||(26204144-26204275)
chr7 (94-225)||(26223782-26223913)
chr7 (96-225)||(26242647-26242776)
chr7 (92-225)||(26297695-26297828)
chr7 (92-216)||(26302061-26302185)
chr7 (92-225)||(26251095-26251228)
chr7 (18-74)||(19103222-19103278)
chr7 (21-70)||(26186662-26186711)
chr7 (25-75)||(26191680-26191730)
chr7 (111-152)||(26227319-26227360)
chr7 (18-55)||(26302244-26302281)
[»] chr4 (1 HSPs)
chr4 (80-225)||(44903500-44903645)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 26155660 - 26155453
Alignment:
Q  18 caatacggactcattttgctttgtgttaagccaatttaaccactcgtcctcttttccaagcgtattgcccttcttttcatcatccttgttagcccatgat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26155660 caatacggactcattttgctttgtgttaagccaatttaaccactcggcctcttttccaagcgtattgcccttcttttcatcatccttgttagcccatgat 26155561  T
Q  118 gaaactggtcctacactccaagttttgatccccatggtagtgttactaagtttttcataatcactttccagttcatgaaaactattgtatagtgttccaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26155560 gaaactggtcctacactccaagttttgatccccatggtagtgttactaagtttttcataatcactttccagttcatgaaaactattgtatagtgttccat 26155461  T
Q  218 agcttctt 225  Q
    | ||||||    
T  26155460 aacttctt 26155453  T

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Target: chr7; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 26129036 - 26128817
Alignment:
Q  21 tacggactcattttgctttgtgttaagccaatttaaccactcgtcctcttttccaagcg---------------tattgcccttcttttcatcatccttg 105  Q
    |||||||||||||||||||| |||||||||||||||||| ||  ||||||||||||||                |||| ||||| |||||||||||||||    
T  26129036 tacggactcattttgctttgagttaagccaatttaaccagtctgcctcttttccaagctcctctatgtgtcccctattccccttgttttcatcatccttg 26128937  T
Q  106 ttagcccatgatgaaactggtcctacactccaagttttgatccccatggtagtgttactaagtttttcataatcactttccagttcatgaaaactattgt 205  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||  ||||||||||||||||||||||||||||||||||||     
T  26128936 ttagcccatgatgaaactggtcctacactccaagatttgatccccaaggtagtgttacaaatgttttcataatcactttccagttcatgaaaactattgc 26128837  T
Q  206 atagtgttccaaagcttctt 225  Q
    ||||||||||| | ||||||    
T  26128836 atagtgttccataacttctt 26128817  T

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Target: chr7; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 80 - 215
Target Start/End: Complemental strand, 26186637 - 26186502
Alignment:
Q  80 tattgcccttcttttcatcatccttgttagcccatgatgaaactggtcctacactccaagttttgatccccatggtagtgttactaagtttttcataatc 179  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||| | |||||||||||||||||| ||||||    
T  26186637 tattacccttcttttcatcatccttgttagccaatgatgaaactggtcctacactccatgatttgatccccaagatagtgttactaagttttttataatc 26186538  T
Q  180 actttccagttcatgaaaactattgtatagtgttcc 215  Q
    ||| ||||||||||||||||||||||||||||||||    
T  26186537 actctccagttcatgaaaactattgtatagtgttcc 26186502  T

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Target: chr7; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 26179554 - 26179333
Alignment:
Q  19 aatacggactcattttgctttgtgttaagccaatttaaccactcgtcctcttttccaag---------------cgtattgcccttcttttcatcatcct 103  Q
    ||||| |||||||||||||||| |||||||||||||| ||| || ||||||||||||||               | | ||| |||| |||||| ||||||    
T  26179554 aatacagactcattttgctttgagttaagccaatttagccattcttcctcttttccaagttcctctatgtgtccccttttggcctttttttcaccatcct 26179455  T
Q  104 tgttagcccatgatgaaactggtcctacactccaagttttgatccccatggtagtgttactaagtttttcataatcactttccagttcatgaaaactatt 203  Q
    |||||| ||| | |||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||| |||||||||||||||||    
T  26179454 tgttagtccaagctgaaactggtcctacactccaagttttgatccccattgtagtgttacttaatttttcataatcactttcaagttcatgaaaactatt 26179355  T
Q  204 gtatagtgttccaaagcttctt 225  Q
    ||||||||||||| | ||||||    
T  26179354 gtatagtgttccataacttctt 26179333  T

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Target: chr7; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 26088254 - 26088041
Alignment:
Q  18 caatacggactcattttgctttgtgttaagccaatttaaccactcgtcctcttttccaagcg---------------tattgcccttcttttcatcatcc 102  Q
    ||||||||||||||||| ||||| |||||||||||||| |||||| |||||||||||||||                ||||| |||| |||||||||| |    
T  26088254 caatacggactcattttcctttgagttaagccaatttagccactcttcctcttttccaagctcctctatgtgtcccctattggcctttttttcatcattc 26088155  T
Q  103 ttgttagcccatgatgaaactggtcctacactccaagttttgatccccatggtagtgttactaagtttttcataatcactttccagttcatgaaaactat 202  Q
    ||||| | ||| | ||||||||| ||||||||||||| |||||||||||| |||||| | | ||||||||||||||||||||||||||||||||||||||    
T  26088154 ttgttggtccaagctgaaactggccctacactccaagatttgatccccattgtagtgcttccaagtttttcataatcactttccagttcatgaaaactat 26088055  T
Q  203 tgtatagtgttcca 216  Q
    ||||||||||||||    
T  26088054 tgtatagtgttcca 26088041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 26112042 - 26111829
Alignment:
Q  18 caatacggactcattttgctttgtgttaagccaatttaaccactcgtcctcttttccaagcg---------------tattgcccttcttttcatcatcc 102  Q
    ||||||||||||||||| ||||| |||||||||||||| |||||| |||||||||||||||                ||||| |||| |||||||||| |    
T  26112042 caatacggactcattttcctttgagttaagccaatttagccactcttcctcttttccaagctcctctatgtgtcccctattggcctttttttcatcattc 26111943  T
Q  103 ttgttagcccatgatgaaactggtcctacactccaagttttgatccccatggtagtgttactaagtttttcataatcactttccagttcatgaaaactat 202  Q
    ||||| | ||| | ||||||||| ||||||||||||| |||||||||||| |||||| | | ||||||||||||||||||||||||||||||||||||||    
T  26111942 ttgttggtccaagctgaaactggccctacactccaagatttgatccccattgtagtgcttccaagtttttcataatcactttccagttcatgaaaactat 26111843  T
Q  203 tgtatagtgttcca 216  Q
    ||||||||||||||    
T  26111842 tgtatagtgttcca 26111829  T

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Target: chr7; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 19103305 - 19103444
Alignment:
Q  86 ccttcttttcatcatccttgttagcccatgatgaaactggtcctacactccaagttttgatccccatggtagtgttactaagtttttcataatcactttc 185  Q
    |||| ||||||||||||||||||||||  | ||||||||||||||||| ||||| |||||||||||  ||||| |||| ||||||| |||||||||||||    
T  19103305 cctttttttcatcatccttgttagccctagctgaaactggtcctacacaccaagatttgatccccaatgtagtcttaccaagttttacataatcactttc 19103404  T
Q  186 cagttcatgaaaactattgtatagtgttccaaagcttctt 225  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  19103405 cagttcatgaaaactattgtatagtgttccataacttctt 19103444  T

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Target: chr7; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 85 - 222
Target Start/End: Complemental strand, 26191655 - 26191518
Alignment:
Q  85 cccttcttttcatcatccttgttagcccatgatgaaactggtcctacactccaagttttgatccccatggtagtgttactaagtttttcataatcacttt 184  Q
    |||||||||||||||||||| |||||||| | ||||||||||||||||||||||| |||||||||| | ||||| |||| |||||| ||||| |||||||    
T  26191655 cccttcttttcatcatcctttttagcccaagctgaaactggtcctacactccaagatttgatcccccttgtagtattacaaagtttctcatattcacttt 26191556  T
Q  185 ccagttcatgaaaactattgtatagtgttccaaagctt 222  Q
    | |||||||||||||||||||||||||| ||| |||||    
T  26191555 ctagttcatgaaaactattgtatagtgtgccatagctt 26191518  T

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Target: chr7; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 94 - 225
Target Start/End: Complemental strand, 26204275 - 26204144
Alignment:
Q  94 tcatcatccttgttagcccatgatgaaactggtcctacactccaagttttgatccccatggtagtgttactaagtttttcataatcactttccagttcat 193  Q
    ||||| || ||||||  ||||| |||||| ||||||| |||||||| ||||||||| || ||||| |||| |||||| |||||||||||||| |||||||    
T  26204275 tcatcgtctttgttaatccatgctgaaaccggtcctatactccaagatttgatccctattgtagttttaccaagtttctcataatcactttctagttcat 26204176  T
Q  194 gaaaactattgtatagtgttccaaagcttctt 225  Q
    ||||||||||||||||||||||||||||||||    
T  26204175 gaaaactattgtatagtgttccaaagcttctt 26204144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 94 - 225
Target Start/End: Complemental strand, 26223913 - 26223782
Alignment:
Q  94 tcatcatccttgttagcccatgatgaaactggtcctacactccaagttttgatccccatggtagtgttactaagtttttcataatcactttccagttcat 193  Q
    ||||| || ||||||  ||||| |||||| ||||||| |||||||| ||||||||| || ||||| |||| |||||| |||||||||||||| |||||||    
T  26223913 tcatcgtctttgttaatccatgctgaaaccggtcctatactccaagatttgatccctattgtagttttaccaagtttctcataatcactttctagttcat 26223814  T
Q  194 gaaaactattgtatagtgttccaaagcttctt 225  Q
    ||||||||||||||||||||||||||||||||    
T  26223813 gaaaactattgtatagtgttccaaagcttctt 26223782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 96 - 225
Target Start/End: Complemental strand, 26242776 - 26242647
Alignment:
Q  96 atcatccttgttagcccatgatgaaactggtcctacactccaagttttgatccccatggtagtgttactaagtttttcataatcactttccagttcatga 195  Q
    |||||||||||||||||| | |||||||||||| |||||||| | |||||| || || ||||| |||||||| || |||||||||||||| |||||||||    
T  26242776 atcatccttgttagcccaggctgaaactggtccgacactccatgatttgattccgattgtagttttactaagattctcataatcactttcaagttcatga 26242677  T
Q  196 aaactattgtatagtgttccaaagcttctt 225  Q
    ||||| ||||||||||  ||| ||||||||    
T  26242676 aaactgttgtatagtgacccatagcttctt 26242647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 26297828 - 26297695
Alignment:
Q  92 tttcatcatccttgttagcccatgatgaaactggtcctacactccaagttttgatccccatggtagtgttactaagtttttcataatcactttccagttc 191  Q
    |||||||||||||||||||||| | |||||||||||| |||||||| |  ||||| || || ||||| |||  |||||| |||||||||||||| |||||    
T  26297828 tttcatcatccttgttagcccaggctgaaactggtccgacactccatgacttgattccgattgtagttttaaaaagtttctcataatcactttcaagttc 26297729  T
Q  192 atgaaaactattgtatagtgttccaaagcttctt 225  Q
    ||||||||| ||||||||||  ||| ||||||||    
T  26297728 atgaaaactgttgtatagtgacccatagcttctt 26297695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 216
Target Start/End: Complemental strand, 26302185 - 26302061
Alignment:
Q  92 tttcatcatccttgttagcccatgatgaaactggtcctacactccaagttttgatccccatggtagtgttactaagtttttcataatcactttccagttc 191  Q
    ||||||| | ||||||||||||    ||||||||||||||| |||||| |||||| ||||| || || | |||||||||  ||||||||||||| |||||    
T  26302185 tttcatccttcttgttagcccaaacagaaactggtcctacattccaagatttgattcccattgttgtttgactaagtttcacataatcactttcaagttc 26302086  T
Q  192 atgaaaactattgtatagtgttcca 216  Q
    |||||||||||||||||||||||||    
T  26302085 atgaaaactattgtatagtgttcca 26302061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 26251228 - 26251095
Alignment:
Q  92 tttcatcatccttgttagcccatgatgaaactggtcctacactccaagttttgatccccatggtagtgttactaagtttttcataatcactttccagttc 191  Q
    |||||||||||||||||||||| |  ||||||||||| |||||||| | |||||| || || ||| | |||| ||| || || |||||| |||| |||||    
T  26251228 tttcatcatccttgttagcccaggcagaaactggtccgacactccatgatttgattccaattgtacttttacaaagcttctcgtaatcattttcaagttc 26251129  T
Q  192 atgaaaactattgtatagtgttccaaagcttctt 225  Q
    ||||||||| ||||||||||  ||| ||||||||    
T  26251128 atgaaaactgttgtatagtgacccatagcttctt 26251095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 19103222 - 19103278
Alignment:
Q  18 caatacggactcattttgctttgtgttaagccaatttaaccactcgtcctcttttcc 74  Q
    |||||| |||||||||||||||| |||||||||||||| |||||| |||||||||||    
T  19103222 caatacagactcattttgctttgagttaagccaatttagccactcttcctcttttcc 19103278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 26186711 - 26186662
Alignment:
Q  21 tacggactcattttgctttgtgttaagccaatttaaccactcgtcctctt 70  Q
    |||||||||| ||||||||| |||||||||||||| |||||| |||||||    
T  26186711 tacggactcaatttgctttgagttaagccaatttagccactcttcctctt 26186662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 26191730 - 26191680
Alignment:
Q  25 gactcattttgctttgtgttaagccaatttaaccactcgtcctcttttcca 75  Q
    |||||||||||||||| |||||||||||||| ||||||  || ||||||||    
T  26191730 gactcattttgctttgagttaagccaatttagccactctgccacttttcca 26191680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 26227360 - 26227319
Alignment:
Q  111 ccatgatgaaactggtcctacactccaagttttgatccccat 152  Q
    ||||| ||||||||||||||||||||| | ||||||||||||    
T  26227360 ccatgctgaaactggtcctacactccatgctttgatccccat 26227319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 26302281 - 26302244
Alignment:
Q  18 caatacggactcattttgctttgtgttaagccaattta 55  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  26302281 caatacagactcattttgctttgagttaagccaattta 26302244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 80 - 225
Target Start/End: Complemental strand, 44903645 - 44903500
Alignment:
Q  80 tattgcccttcttttcatcatccttgttagcccatgatgaaactggtcctacactccaagttttgatccccatggtagtgttactaagtttttcataatc 179  Q
    |||||||||||  ||||||| ||||||||||||| | |||||||||||||||||||||||  || |||||||| ||||| ||||||| ||| ||||||||    
T  44903645 tattgcccttccgttcatcacccttgttagcccaagttgaaactggtcctacactccaagacttaatccccattgtagttttactaactttctcataatc 44903546  T
Q  180 actttccagttcatgaaaactattgtatagtgttccaaagcttctt 225  Q
    |||||| |||||||||||||||||| ||| ||| ||| | ||||||    
T  44903545 actttcaagttcatgaaaactattgcatattgtcccataacttctt 44903500  T

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