View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12828_low_8 (Length: 215)
Name: NF12828_low_8
Description: NF12828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12828_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 4441480 - 4441285
Alignment:
| Q |
13 |
ggacatcaattagcagcatcttcagcaatggtaaacttattggtgtagtgctttgcacgtctagatgaattccaccacaaatactgaggaacaaacaaat |
112 |
Q |
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| T |
4441480 |
ggacatcaattagcagcatcttcagcgatggtaaacttattggtgtagtgctttgcacgtctagatgaattccaccacaaatactgaggaacaaacaaat |
4441381 |
T |
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| Q |
113 |
aatgttatatcacatttcataactatttagcactgatacttaagattgaagtcatatacactttggtgtcggacaacaacacagacactaacatatt |
209 |
Q |
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| T |
4441380 |
aatgttatatcacatttcataactatttaggactgatacttaagattgaagtcatatacactttggtgtcggacaacaacac-gacactaacatatt |
4441285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 8383243 - 8383383
Alignment:
| Q |
18 |
tcaattagcagcatcttcagcaatggtaaacttattggtgtagtgctttgcacgtctagatgaattccaccacaaatactgaggaacaaacaaataatgt |
117 |
Q |
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| T |
8383243 |
tcaattagcagtatcttcagtgatggtaaacttattgtcgtaaagctttgtatgtttagatgaattgcattgcaaagactgtggaacaaacgaattattt |
8383342 |
T |
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| Q |
118 |
tatatcacatttcataactatttagcactgatacttaagatt |
159 |
Q |
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| T |
8383343 |
tatatcaca-ttcataactatttagcactgatacataagatt |
8383383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 8367244 - 8367361
Alignment:
| Q |
18 |
tcaattagcagcatcttcagcaatggtaaacttattggtgtagtgctttgcacgtctagatgaattccaccacaaatactgaggaacaaacaaataatgt |
117 |
Q |
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||||||||||| |||||||| ||||||||||||||| |||| |||||| | || |||||||||| ||| || ||||||| | ||||||||||| || | |
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| T |
8367244 |
tcaattagcagtatcttcagtgatggtaaacttattgtcgtagagctttgaatgtttagatgaatttcactacgaatactgtgtaacaaacaaattatat |
8367343 |
T |
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| Q |
118 |
tatatcacatttcataac |
135 |
Q |
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||||| | |||||||||| |
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| T |
8367344 |
tatatgaaatttcataac |
8367361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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