View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12828_low_9 (Length: 204)
Name: NF12828_low_9
Description: NF12828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12828_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 1696135 - 1696306
Alignment:
| Q |
11 |
gtgagatgaacagtccaaacgagataacattccctgcattcaaatttcacaaaaatcaatcagaaacatgtatgattaatcgattaacataaaaagctaa |
110 |
Q |
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| T |
1696135 |
gtgagaagaacagtccaaacgagataacattccctgcattcaaatttcacaaaaatcaatcagaaacatgtatgattaatcgattaacataaaaagctaa |
1696234 |
T |
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| Q |
111 |
aatcaatcgtaactgaactaaagacttctaaaatcgattatcagaaaaagttaaaattatactttatgcatg |
182 |
Q |
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| T |
1696235 |
aatcaatcgtaactgaactaaaaacttccaaaatcgattatcagaaaaagttaaaattatactttatgcatg |
1696306 |
T |
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Target: chr6; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 1685593 - 1685760
Alignment:
| Q |
18 |
gaacagtccaaacgagataacattccctgcattcaaa-tttcacaaaa--atcaatcagaaacatgtatgattaatcgattaacataaaaagctaaaatc |
114 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1685593 |
gaacagtccaaacgagataacattcccttcattcaaaatttcagaaaaaaatcaatcagaaacatgtatgattaatcgattaacacaaaaagctaaaatc |
1685692 |
T |
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| Q |
115 |
aatcgtaactgaactaaagacttctaaaatcgattatcagaaaaagttaaaattatactttatgcatg |
182 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1685693 |
aatcgtaactgaactaaaaacttcaaaaatcgattatcagaaaaagttaaaattatactttatgcatg |
1685760 |
T |
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