View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12829_high_1 (Length: 887)
Name: NF12829_high_1
Description: NF12829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12829_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 15 - 467
Target Start/End: Complemental strand, 28095175 - 28094725
Alignment:
| Q |
15 |
cacagacaaacacatctcagaataagaaacgtcaagaaaagttagttgcattcatgttgtcaccaacaccatcgttcactccatccatatgttttcgtca |
114 |
Q |
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| T |
28095175 |
cacagacaaacacatctcagaataagaaacgtcaagaaaagttagttgcattcatgttgtcaccaacaccatcgttcactccatccatatgttttcgtca |
28095076 |
T |
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| Q |
115 |
ttttatcctttgttcttctgctttgtcctacaaccttgcttacaacaaagtgaaaatcatatcagggacnnnnnnngtaataagagaatggaagataaaa |
214 |
Q |
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| T |
28095075 |
ttttatcctttgttcttctgctttgtcctacaaccttgcttacaacaaagtgaaaatcatatcagggacaaaaaaagtaataagagaatggaagataaaa |
28094976 |
T |
|
| Q |
215 |
aagtaattagagtcatatttataccaagaattacatgatgcaaagccattactctaccaattacttaatagatattaatttcaaacatctcataattaca |
314 |
Q |
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| T |
28094975 |
--gtaattagagtcatatttataccaagaattacatgatgcaaagccattattctaccaattacttaatagatattaatttcaaacatctcataattaca |
28094878 |
T |
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| Q |
315 |
aaacaagataattactctgccgctggcacaaacatgagacatatcacaagagaataaggaatcaagagacggaaaaaacccaacgtatgccaattcattg |
414 |
Q |
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| T |
28094877 |
aaacaagataattactctgccgctggcacaaacatgagacatatcacaagagaataaggaatcaagagacggaaaaaacccaacgtatgccaattcattg |
28094778 |
T |
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| Q |
415 |
attcatgttagcaacacattcacaacattcaagttgacaattgtgatcatttt |
467 |
Q |
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| T |
28094777 |
attcatgttagcaacacattcacaacattcaagttgacaattgtgatcatttt |
28094725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 532 - 869
Target Start/End: Complemental strand, 28094659 - 28094330
Alignment:
| Q |
532 |
ctccattgaattgcattacagaaaccgaacatgtagattcaatgttgccggtatttgctattaatattaaaatggtttaattagaaagtgatgtgagaag |
631 |
Q |
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| T |
28094659 |
ctccattgaattgcattacagaaaccgaacatgtagattcaatgttgccagtatttgctattaatattaaaatggtttaattagaaagtgatgtgagaag |
28094560 |
T |
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| Q |
632 |
agttcaatgtaagccactgcaccataaa-ctaacccttgtcaaaacatttctccggtgctactcttcgttatatattgtaaaagatgttatcaaactaag |
730 |
Q |
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| T |
28094559 |
agttcaatgaatt-------attataactctaaaccttgtcaaaacatttctccagtgctactcttcattatatattgtaaaagatgttatcaaactaag |
28094467 |
T |
|
| Q |
731 |
ttagtagtaaacaaggatatgtaggccgagtgagctcatatgctcaagagtcaagacaaagtcatgatgacttattctaactctataacataccaataat |
830 |
Q |
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| T |
28094466 |
ttagtagtaaacaaggatatgtaggccgagtgagctcatatgctcaagagtcaagacaaagtcatgatgacttattataactc--taacataccaataat |
28094369 |
T |
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| Q |
831 |
gataaatgcaaaacagtcatcactttgtcactcatacat |
869 |
Q |
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| T |
28094368 |
gataaatgcaaaacagtcatcactttgtcactcatacat |
28094330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 281 - 335
Target Start/End: Complemental strand, 7035669 - 7035615
Alignment:
| Q |
281 |
aatagatattaatttcaaacatctcataattacaaaacaagataattactctgcc |
335 |
Q |
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|||||||||| ||||||||||||||| |||| ||||||||||||| |||| |||| |
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| T |
7035669 |
aatagatattgatttcaaacatctcacaattccaaaacaagataactactatgcc |
7035615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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