View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12829_high_2 (Length: 572)
Name: NF12829_high_2
Description: NF12829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12829_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 78 - 560
Target Start/End: Complemental strand, 37090029 - 37089549
Alignment:
| Q |
78 |
caaaccaaacacatactaaatttctatctgtcaacacttaatattacatatcaatcaacttctttaaaaacaatgttctactaatcacccaaaatcaaca |
177 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||| |||||| |||||| ||| | ||||| |||||||||| |||||| ||||||||||| |
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| T |
37090029 |
caaaccaaacacatactaaatatctatttgtcaacacttaatagtacataacaatcatcttgta-aaaaataatgttctacaaatcactcaaaatcaaca |
37089931 |
T |
|
| Q |
178 |
aacgtgaggcattatatttacctcctgcacacaatctataaggccaaacaaaataatttt-tatgcttcttccttcccatcaacaccaattttgacttca |
276 |
Q |
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||| ||||||||||||||||||||||||||| |||||||| |||||||||||| ||| | ||| |||||||||||||||||| |||| |||||||||| |
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| T |
37089930 |
aacatgaggcattatatttacctcctgcaca--atctataatgccaaacaaaatgattctctatacttcttccttcccatcaattccaactttgacttca |
37089833 |
T |
|
| Q |
277 |
ttcacaagcacaagctctttctctacattgtcattactctcaatattgttgtgttgaactttgtattgatgcctcattgataagacaagaaaaagtacaa |
376 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37089832 |
ttcacaagcacaagctctttctctacattgtcattactctcaatattgttgtgttgaactttgtattgatgcctcattgataagacaagaaaaagtacaa |
37089733 |
T |
|
| Q |
377 |
aattcagcactccaagaattgctagtaaccaatagaagtaatctaacttacccttatcaagattactcttcaaccatcttttcttgcttactttgtccac |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37089732 |
aattcagcactccaagaattgctagtaaccaatagaagtaatctaacttacccttatcaagattactcttcaaccatcttttcttgcttactttgtccac |
37089633 |
T |
|
| Q |
477 |
aattgaaaccaataaactactaacaaaatatcccattgaaagtgtacatagaaaaagaccagtactcatagatttcatcctctc |
560 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37089632 |
aattgaaaccaataaactactaacaaaatatcccattgaaagtgtacatagaaaaagaccagtactcatagatttcatcctctc |
37089549 |
T |
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