View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12829_high_3 (Length: 470)
Name: NF12829_high_3
Description: NF12829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12829_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 456
Target Start/End: Complemental strand, 5821525 - 5821084
Alignment:
| Q |
16 |
gaaactttgtgttgatggaagagt----gaggtttcatttttatttgaagtaactcgctactaacattatgttaatcctacgtcttccgggccagctaac |
111 |
Q |
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| T |
5821525 |
gaaactttgtgttggtggaagagtaagtgaggttttatttttatttgaagtaacttgctactagcattatgttaatcctacgtctgccgggccagataac |
5821426 |
T |
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| Q |
112 |
ttgcaacattcggacggtactgaaggtgggtttagtcgggtggattggttccagaaacccctatggaagtgcagccccatcctattctaagtaaagtggt |
211 |
Q |
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| T |
5821425 |
tcgcaacatttgaacggtactgaacgtgggtttagtcgggtggattggttccagaaacccctatggaagtgcagccccatcctattctaagtaaagtggt |
5821326 |
T |
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| Q |
212 |
gcaagatgatattgcggcaattcaccgatttatgcaatctacggcaggttactgtggttgatgatatactaattaacctatttttgcattctgtgacaga |
311 |
Q |
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| T |
5821325 |
gcaagatgatactgcggcaattcaccaatttatgaaatctacggcaggttactctgtaggttactgtggt--ttaacctatttttgcattctgtgacaga |
5821228 |
T |
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| Q |
312 |
ttacaagagtaaactgtgcaaattttcagcaagtaaaaaggaacgacttgaacggcttttacatgtcattgatgtcgatcttaactaacaagatatcttg |
411 |
Q |
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|||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5821227 |
ttacaagattaaacagtgc-aattttcagcaagtaaaaaggaacgacttgaacggcttttacatgtcattgatgtcgatcttaactaacaagatatcttt |
5821129 |
T |
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| Q |
412 |
gttcttgatacttctgccaaatttttcaatgataattcaccactc |
456 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5821128 |
gttcttgatacttctgccaaatttttcaatgagaattcaccactc |
5821084 |
T |
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