View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12829_high_8 (Length: 288)

Name: NF12829_high_8
Description: NF12829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12829_high_8
NF12829_high_8
[»] chr4 (3 HSPs)
chr4 (1-75)||(39379636-39379710)
chr4 (211-280)||(39379425-39379494)
chr4 (120-174)||(39379531-39379585)


Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 39379710 - 39379636
Alignment:
Q  1 gcaacaagaggtataagttttgttgagctgtaaatgtccttcttctacacccttttaatatcaaccctcatatag 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39379710 gcaacaagaggtataagttttgttgagctgtaaatgtccttcttctacacccttttaatatcaaccctcatatag 39379636  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 39379494 - 39379425
Alignment:
Q  211 aaacaatgttcaaaaaccactccctagtcaaatttctaaaaccatgaaaacaacactttctcttcttctc 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39379494 aaacaatgttcaaaaaccactccctagtcaaatttctaaaaccatgaaaacaacactttctcttcttctc 39379425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 39379585 - 39379531
Alignment:
Q  120 acaatataattccttccacatggacctctgtcctatcgcattaaatccccgttac 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39379585 acaatataattccttccacatggacctctgtcctatcgcattaaatccccgttac 39379531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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