View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12829_high_9 (Length: 242)
Name: NF12829_high_9
Description: NF12829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12829_high_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 42610153 - 42610376
Alignment:
| Q |
19 |
taccataataacttccatctaaaatatgttccataatagcagcagcctcaatttgaccaggatgaagtttcactttatgaattaaatggtcagtgaattg |
118 |
Q |
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| T |
42610153 |
taccataataacttccatctaaaatatgttccataatagcagcagcctcaatttgaccaggatgaagtttcactttatgaattaaatggtcagtgaattg |
42610252 |
T |
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| Q |
119 |
aggttttcctagcataacttccgcgaaaatcgcagacaaaatttccgagagaacaactagtaaatttgtatcaaaaagaaccaatgaagccaaacctgat |
218 |
Q |
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| T |
42610253 |
aggttttcctagcataacttccgcgaaaatcgcagacaaaatttccgagagaacaactagtaaatttgtatcaaaaagaaccaatgaagccaaacctgat |
42610352 |
T |
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| Q |
219 |
ccaactgcagtaccattcactagt |
242 |
Q |
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| T |
42610353 |
ccaactgcagtaccattcactagt |
42610376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 148
Target Start/End: Original strand, 28184778 - 28184896
Alignment:
| Q |
30 |
cttccatctaaaatatgttccataatagcagcagcctcaatttgaccaggatgaagtttcactttatgaattaaatggtcagtgaattgaggttttccta |
129 |
Q |
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|||||||| |||||||| ||||||||||||||||| |||||||||||||| ||| | |||| |||||| | ||||| ||||| |||| |||||| ||| |
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| T |
28184778 |
cttccatccaaaatatgctccataatagcagcagcttcaatttgaccagggtgatgcttcaacttatgagtcaaatgatcagtaaattcaggtttccctt |
28184877 |
T |
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| Q |
130 |
gcataacttccgcgaaaat |
148 |
Q |
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| T |
28184878 |
gcataacttcagcgaaaat |
28184896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 40549349 - 40549225
Alignment:
| Q |
39 |
aaaatatgttccataatagcagcagcctcaatttgaccaggatgaagtttcactttatgaattaaatggtcagtgaattgaggttttcctagcataactt |
138 |
Q |
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| T |
40549349 |
aaaatatgttccatcaaggctgcagcttcaatttgaccaggatgatgtttcaatttatgtgttaaatgatctgtaaactctggctttccttgcataactt |
40549250 |
T |
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| Q |
139 |
ccgcgaaaatcgcagacaaaatttc |
163 |
Q |
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| T |
40549249 |
cagcgaaaatcgctgacataatttc |
40549225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 40944642 - 40944592
Alignment:
| Q |
29 |
acttccatctaaaatatgttccataatagcagcagcctcaatttgaccagg |
79 |
Q |
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| T |
40944642 |
acttccatccaaaatgtgttccataatagcagcagcctcaatttgaccagg |
40944592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 40958607 - 40958557
Alignment:
| Q |
29 |
acttccatctaaaatatgttccataatagcagcagcctcaatttgaccagg |
79 |
Q |
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| T |
40958607 |
acttccatccaaaatgtgttccataatagcagcagcctcaatttgaccagg |
40958557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 43216391 - 43216339
Alignment:
| Q |
30 |
cttccatctaaaatatgttccataatagcagcagcctcaatttgaccaggatg |
82 |
Q |
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| T |
43216391 |
cttccatctaaaatgtgttccataatagcagctgcctcgatttgacctggatg |
43216339 |
T |
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