View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12829_low_10 (Length: 288)

Name: NF12829_low_10
Description: NF12829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12829_low_10
NF12829_low_10
[»] chr4 (3 HSPs)
chr4 (1-75)||(39379636-39379710)
chr4 (211-280)||(39379425-39379494)
chr4 (120-174)||(39379531-39379585)


Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 39379710 - 39379636
Alignment:
Q  1 gcaacaagaggtataagttttgttgagctgtaaatgtccttcttctacacccttttaatatcaaccctcatatag 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39379710 gcaacaagaggtataagttttgttgagctgtaaatgtccttcttctacacccttttaatatcaaccctcatatag 39379636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 39379494 - 39379425
Alignment:
Q  211 aaacaatgttcaaaaaccactccctagtcaaatttctaaaaccatgaaaacaacactttctcttcttctc 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39379494 aaacaatgttcaaaaaccactccctagtcaaatttctaaaaccatgaaaacaacactttctcttcttctc 39379425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 39379585 - 39379531
Alignment:
Q  120 acaatataattccttccacatggacctctgtcctatcgcattaaatccccgttac 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39379585 acaatataattccttccacatggacctctgtcctatcgcattaaatccccgttac 39379531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University