View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12829_low_13 (Length: 239)

Name: NF12829_low_13
Description: NF12829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12829_low_13
NF12829_low_13
[»] chr3 (42 HSPs)
chr3 (1-223)||(10500354-10500576)
chr3 (3-222)||(10527138-10527356)
chr3 (2-222)||(10517263-10517483)
chr3 (2-222)||(11782053-11782273)
chr3 (22-102)||(10376012-10376092)
chr3 (17-222)||(10260515-10260717)
chr3 (25-222)||(11160067-11160261)
chr3 (25-222)||(8861111-8861305)
chr3 (25-222)||(10889131-10889325)
chr3 (22-222)||(11769056-11769253)
chr3 (17-102)||(10126745-10126830)
chr3 (17-102)||(10184059-10184144)
chr3 (32-102)||(10363965-10364035)
chr3 (17-102)||(10031820-10031905)
chr3 (17-222)||(10663343-10663545)
chr3 (16-126)||(13343905-13344015)
chr3 (29-126)||(13332733-13332830)
chr3 (22-102)||(9838683-9838763)
chr3 (22-102)||(9849561-9849641)
chr3 (40-102)||(10088630-10088692)
chr3 (40-102)||(10195513-10195575)
chr3 (16-126)||(13289481-13289591)
chr3 (29-126)||(13160809-13160906)
chr3 (16-126)||(13170847-13170957)
chr3 (23-222)||(10580424-10580620)
chr3 (33-74)||(10077102-10077143)
chr3 (22-102)||(10434211-10434291)
chr3 (147-222)||(10031947-10032022)
chr3 (147-222)||(10126872-10126947)
chr3 (147-222)||(10375895-10375970)
chr3 (156-222)||(10184195-10184261)
chr3 (158-222)||(11131076-11131140)
chr3 (158-222)||(11148904-11148968)
chr3 (147-222)||(9838805-9838880)
chr3 (147-222)||(9849683-9849758)
chr3 (147-222)||(10077213-10077288)
chr3 (147-222)||(10434094-10434169)
chr3 (156-222)||(10088743-10088809)
chr3 (156-222)||(10195626-10195692)
chr3 (156-222)||(10363848-10363914)
chr3 (40-102)||(11131193-11131255)
chr3 (40-102)||(11149021-11149083)
[»] chr8 (2 HSPs)
chr8 (5-223)||(11484819-11485037)
chr8 (22-222)||(44957759-44957956)
[»] chr4 (1 HSPs)
chr4 (1-222)||(17852994-17853215)
[»] chr2 (1 HSPs)
chr2 (22-222)||(26906719-26906916)
[»] scaffold0083 (1 HSPs)
scaffold0083 (32-96)||(49981-50045)
[»] scaffold0002 (2 HSPs)
scaffold0002 (16-126)||(146082-146192)
scaffold0002 (16-126)||(136031-136141)
[»] chr6 (1 HSPs)
chr6 (16-222)||(31679783-31679986)
[»] chr7 (1 HSPs)
chr7 (62-131)||(29836511-29836580)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 10500354 - 10500576
Alignment:
Q  1 ccttggcttacaaagaactgtaagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10500354 ccttggcttacaaagaactgtaagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaatgatgataaa 10500453  T
Q  101 gatagactcgtcaatatgttggtatcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10500454 gatagactcgtcaatatgttggtatcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaa 10500553  T
Q  201 cacttgctcaacttgtttacaac 223  Q
    |||||||||||||||||||||||    
T  10500554 cacttgctcaacttgtttacaac 10500576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 10527138 - 10527356
Alignment:
Q  3 ttggcttacaaagaactgtaagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaaga 102  Q
    ||||||| || ||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  10527138 ttggcttgcagagaactgtaagtgatagattttctcgtagaaccccttcaagttcagtggtaaatgaatctgtcattgtgggtaggaatgatgataaaga 10527237  T
Q  103 tagactcgtcaatatgttggtatcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaaca 202  Q
    | ||||| |||||||||||||||||||   ||| ||  | ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||     
T  10527238 t-gactcatcaatatgttggtatcagactgtggcaccagtagaaataataatttaggtgttgttgcaatcttgggtatgggaggtgtcggtaaaacaacc 10527336  T
Q  203 cttgctcaacttgtttacaa 222  Q
    ||||| ||||||||||||||    
T  10527337 cttgcacaacttgtttacaa 10527356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 10517263 - 10517483
Alignment:
Q  2 cttggcttacaaagaactgtaagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaag 101  Q
    |||||||| |||||||| ||||||||| ||||||||  |||||| | ||||||||| ||| |||||||||||| | ||||||||||||| ||||||||||    
T  10517263 cttggcttgcaaagaacggtaagtggtggagtttcttctagaaccctttcaagttcggtgctaaatgaatctgacgtggtgggtaggaatgatgataaag 10517362  T
Q  102 atagactcgtcaatatgttggtatcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaac 201  Q
    |||||||| |||||||||||||||||||| |||| ||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||    
T  10517363 atagactcatcaatatgttggtatcagatgttggcacaagcagaaataataatttaggtgttgctgcaattgtgggtatgggaggcgtcggtaaaacgac 10517462  T
Q  202 acttgctcaacttgtttacaa 222  Q
     ||||| ||  ||||||||||    
T  10517463 ccttgcacagtttgtttacaa 10517483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 11782273 - 11782053
Alignment:
Q  2 cttggcttacaaagaactgtaagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaag 101  Q
    |||||||| |||||||| ||||||||| ||||||||  |||||| ||||||||||||||| ||||| |||||| | ||||||||||||| ||||||||||    
T  11782273 cttggcttgcaaagaacggtaagtggtggagtttcttctagaaccccttcaagttcagtgctaaatcaatctgacgtggtgggtaggaatgatgataaag 11782174  T
Q  102 atagactcgtcaatatgttggtatcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaac 201  Q
    |||||||| |||||||| || |||||||     | ||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  11782173 atagactcatcaatatgctgatatcagaccgcagcaccagcagaaataataatttaggtgttgtcgcaattttgggtatgggaggcgtcggtaaaacgac 11782074  T
Q  202 acttgctcaacttgtttacaa 222  Q
     ||||| || |||||||||||    
T  11782073 ccttgcacagcttgtttacaa 11782053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 10376092 - 10376012
Alignment:
Q  22 aagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaaga 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10376092 aagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaaga 10376012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 10260515 - 10260717
Alignment:
Q  17 actgtaagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaagatagactcgtcaata 116  Q
    |||||||||||||||||||||| ||||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | |  | || |    
T  10260515 actgtaagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaaca 10260614  T
Q  117 tgttggtatcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgt 216  Q
    ||||| ||||| | |  | ||||   |  || |||||| |||||||||||||||||||||| ||||||||  | || ||||| || ||||||||||||||    
T  10260615 tgttgctatcacagagagaaaca---accaacaataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgctcaacttgt 10260711  T
Q  217 ttacaa 222  Q
    ||||||    
T  10260712 ttacaa 10260717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 11160261 - 11160067
Alignment:
Q  25 tggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaagatagactcgtcaatatgttggta 124  Q
    ||||| ||||||||||||||| |||||||||||||| || |||| |||||||||||| ||||| || ||||||||||| | | |  | || |||||| ||    
T  11160261 tggtaaagtttctcgtagaaccccttcaagttcagtagttaatgcatctgtcatggttggtagaaatgatgataaagagacaataatgaacatgttgcta 11160162  T
Q  125 tcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaa 222  Q
    ||||| | | | || ||||   |||| ||| |||| |||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||    
T  11160161 tcagagagtagcactggca---ataacaatataggcgttgttgcaattttaggtatgggaggtgtcggtaaaacgacacttgcacaacttgtttacaa 11160067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 8861111 - 8861305
Alignment:
Q  25 tggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaagatagactcgtcaatatgttggta 124  Q
    ||||| ||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||| || ||||||||||| | | |  | || |||||| ||    
T  8861111 tggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacagtaatgaacatgttgcta 8861210  T
Q  125 tcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaa 222  Q
    ||||| |   | ||    || ||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||    
T  8861211 tcagagagcagcac---taggaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggtaaaacgacacttgcacaacttgtttacaa 8861305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 10889131 - 10889325
Alignment:
Q  25 tggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaagatagactcgtcaatatgttggta 124  Q
    ||||| ||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||| || ||||||||||| | | |  | || |||||| ||    
T  10889131 tggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacaataatgaacatgttgcta 10889230  T
Q  125 tcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaa 222  Q
    ||||| |   | ||    || ||||| ||| | ||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||    
T  10889231 tcagagagcagcac---taggaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggtaaaacgacacttgcacaacttgtttacaa 10889325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 22 - 222
Target Start/End: Original strand, 11769056 - 11769253
Alignment:
Q  22 aagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaagatagactcgtcaatatgttg 121  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| | | |  | || ||||||    
T  11769056 aagtgctagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatagtgggtaggaagaatgacaaagagacaataatgaacatgttg 11769155  T
Q  122 gtatcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttaca 221  Q
     ||||| | |  |  |||   |   |||||||| |||||||||||||||||||||| ||||||||  | || ||||| || |||||||||||||| ||||    
T  11769156 ctatcacagagagacaca---atccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgctcaacttgtctaca 11769252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 10126745 - 10126830
Alignment:
Q  17 actgtaagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaaga 102  Q
    |||||||||||||||||||||| ||||   |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10126745 actgtaagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaaga 10126830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 10184059 - 10184144
Alignment:
Q  17 actgtaagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaaga 102  Q
    |||||||||||||||||||||| ||||   |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10184059 actgtaagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaaga 10184144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 10364035 - 10363965
Alignment:
Q  32 gtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaaga 102  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10364035 gtttcacgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaaga 10363965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 10031820 - 10031905
Alignment:
Q  17 actgtaagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaaga 102  Q
    |||||||||||||||||||||| ||||   ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  10031820 actgtaagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctctcatggtgggtaggaaggatgacaaaga 10031905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 10663343 - 10663545
Alignment:
Q  17 actgtaagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaagatagactcgtcaata 116  Q
    |||||||||||||||||||||| ||||   ||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| | | |  | || |    
T  10663343 actgtaagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctctcatggtgggtaggaagggtgacaaagagacaataatgaaca 10663442  T
Q  117 tgttggtatcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgt 216  Q
    ||||| ||||| | |  |  |||   |   |||||||| |||||||||||||||||||||| ||||||||  | || ||||| || ||||| ||||||||    
T  10663443 tgttgctatcacagagagacaca---acccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgt 10663539  T
Q  217 ttacaa 222  Q
    ||||||    
T  10663540 ttacaa 10663545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 13343905 - 13344015
Alignment:
Q  16 aactgtaagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaagatagactcgtcaat 115  Q
    |||||| || || ||||||||||  |||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||| |||||| | | |    
T  13343905 aactgtgagcgggagagtttctctaagaacaccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagt 13344004  T
Q  116 atgttggtatc 126  Q
    |||||| ||||    
T  13344005 atgttgatatc 13344015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 13332733 - 13332830
Alignment:
Q  29 agagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaagatagactcgtcaatatgttggtatc 126  Q
    |||||||||| |||||| |||||||||||| |||||||||||||||| ||||| |||||||||||||||||||| |||||| | | ||||||| ||||    
T  13332733 agagtttctcttagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatc 13332830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 9838683 - 9838763
Alignment:
Q  22 aagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaaga 102  Q
    ||||| |||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||| |||||    
T  9838683 aagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaaga 9838763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 9849561 - 9849641
Alignment:
Q  22 aagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaaga 102  Q
    ||||| |||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||| |||||    
T  9849561 aagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaaga 9849641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 10088630 - 10088692
Alignment:
Q  40 tagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaaga 102  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10088630 tagaactccttcaagttcggtggtaaatgaatctgtcatggtgggtaggaaggatgataaaga 10088692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 10195513 - 10195575
Alignment:
Q  40 tagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaaga 102  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10195513 tagaactccttcaagttcagtggtaaatgaatctgtcatggtgggtagaaaggatgataaaga 10195575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 13289481 - 13289591
Alignment:
Q  16 aactgtaagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaagatagactcgtcaat 115  Q
    |||||| || || |||||||||| |||||| |||||||||||| |||||||| ||||||| ||||| |||||||||||||||||||| |||||| | | |    
T  13289481 aactgtgagagggagagtttctcttagaacgccttcaagttcaatggtaaataaatctgttatggttggtaggaaggatgataaagagagactcattagt 13289580  T
Q  116 atgttggtatc 126  Q
    |||||| ||||    
T  13289581 atgttgatatc 13289591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 13160809 - 13160906
Alignment:
Q  29 agagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaagatagactcgtcaatatgttggtatc 126  Q
    ||||||||||  ||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||||| || |||||||| | ||||||| ||||    
T  13160809 agagtttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaggagagactcgttagtatgttgatatc 13160906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 13170847 - 13170957
Alignment:
Q  16 aactgtaagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaagatagactcgtcaat 115  Q
    |||||| || || ||||||||||  ||||| |||||||||||| |||||||||||||||| ||||| || ||||||||||||||||| |||||| | | |    
T  13170847 aactgtgagcgggagagtttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggaaggaaggatgataaagagagactcattagt 13170946  T
Q  116 atgttggtatc 126  Q
    |||||| ||||    
T  13170947 atgttgatatc 13170957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 10580424 - 10580620
Alignment:
Q  23 agtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaagatagactcgtcaatatgttgg 122  Q
    |||| ||||||||||| | |||| ||||||||||| ||| | || ||||||||||||||||||||||||||||| ||||| | | |  | || ||||||     
T  10580424 agtgctagagtttctcatggaactccttcaagttctgtgtttaacgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgc 10580523  T
Q  123 tatcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaa 222  Q
    ||||| | |  | ||||   |   |||||||| |||||||||||||||||||||| ||||||||  | || ||||| || ||||| ||||||||||||||    
T  10580524 tatcacaga--gaaaca-caatccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaa 10580620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 10077102 - 10077143
Alignment:
Q  33 tttctcgtagaacaccttcaagttcagtggtaaatgaatctg 74  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10077102 tttctcgtagaacaccttcaagttcagtggtaaatgaatctg 10077143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 10434291 - 10434211
Alignment:
Q  22 aagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaaga 102  Q
    |||||| |||||||||| |||||  ||||||||||| ||||| ||||||||| ||||||| || ||||||||||| |||||    
T  10434291 aagtgggagagtttctcatagaaatccttcaagttctgtggtcaatgaatctttcatggttggaaggaaggatgacaaaga 10434211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 10031947 - 10032022
Alignment:
Q  147 ataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaa 222  Q
    |||||||| |||||||||||||||||||||| ||||||||  | || ||||| || ||||| ||||||||||||||    
T  10031947 ataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaa 10032022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 10126872 - 10126947
Alignment:
Q  147 ataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaa 222  Q
    |||||||| |||||||||||||||||||||| ||||||||  | || ||||| || ||||| ||||||||||||||    
T  10126872 ataataatataggtgttgttgcaattttgggcatgggaggtttgggaaaaactacccttgcccaacttgtttacaa 10126947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 10375970 - 10375895
Alignment:
Q  147 ataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaa 222  Q
    |||||||| |||||||||||||||||||||| ||||||||  | || ||||| || ||||| ||||||||||||||    
T  10375970 ataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaa 10375895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 10184195 - 10184261
Alignment:
Q  156 taggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaa 222  Q
    |||||||||||||||||||||| ||||||||  | || ||||| || ||||||||||||||||||||    
T  10184195 taggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgctcaacttgtttacaa 10184261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 11131140 - 11131076
Alignment:
Q  158 ggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaa 222  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||| ||||| ||| ||| ||||||    
T  11131140 ggtgttgttgcaattttaggtatgggaggtgtcggaaaaacaacccttgcacaaattgcttacaa 11131076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 11148968 - 11148904
Alignment:
Q  158 ggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaa 222  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||| ||||| ||| ||| ||||||    
T  11148968 ggtgttgttgcaattttaggtatgggaggtgtcggaaaaacaacccttgcacaaattgcttacaa 11148904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 9838805 - 9838880
Alignment:
Q  147 ataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaa 222  Q
    |||| ||| |||||||||||||||||||||| ||||||||  | || ||||| || ||||| ||||||||||||||    
T  9838805 ataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaa 9838880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 9849683 - 9849758
Alignment:
Q  147 ataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaa 222  Q
    |||| ||| |||||||||||||||||||||| ||||||||  | || ||||| || ||||| ||||||||||||||    
T  9849683 ataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaa 9849758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 10077213 - 10077288
Alignment:
Q  147 ataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaa 222  Q
    |||||||  |||||||||||||||||||||| ||||||||  | || ||||| || ||||| ||||||||||||||    
T  10077213 ataataagataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaa 10077288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 10434169 - 10434094
Alignment:
Q  147 ataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaa 222  Q
    |||||||  ||||||||||||||||||| || ||||||||  | || ||||| || ||||| ||||||||||||||    
T  10434169 ataataagataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaa 10434094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 10088743 - 10088809
Alignment:
Q  156 taggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaa 222  Q
    ||||||||||||||||||| || ||||||||  | || ||||| || ||||| ||||||||||||||    
T  10088743 taggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaa 10088809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 10195626 - 10195692
Alignment:
Q  156 taggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaa 222  Q
    ||||||||||||||||||| || ||||||||  | || ||||| || ||||| ||||||||||||||    
T  10195626 taggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaa 10195692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 10363914 - 10363848
Alignment:
Q  156 taggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaa 222  Q
    ||||||||||||||||||| || ||||||||  | || ||||| || ||||| ||||||||||||||    
T  10363914 taggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaa 10363848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 11131255 - 11131193
Alignment:
Q  40 tagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaaga 102  Q
    |||||||||||| ||||| ||||| ||||||||  ||||||| ||||| |||||||| |||||    
T  11131255 tagaacaccttctagttctgtggttaatgaatcattcatggttggtagaaaggatgacaaaga 11131193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 11149083 - 11149021
Alignment:
Q  40 tagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaaga 102  Q
    |||||||||||| ||||| ||||| ||||||||  ||||||| ||||| |||||||| |||||    
T  11149083 tagaacaccttctagttctgtggttaatgaatcattcatggttggtagaaaggatgacaaaga 11149021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 11484819 - 11485037
Alignment:
Q  5 ggcttacaaagaactgtaagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaagata 104  Q
    ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||| || ||||||||||    
T  11484819 ggcttgcaaagaactgtaagaggtagagtttctcgtagaacaccatcaagttcagtggtgaatgaatctgttatggtgggaaggaatgaagataaagata 11484918  T
Q  105 gactcgtcaatatgttggtatcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacact 204  Q
    ||||| |  || |||||||||||||   ||| ||  ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||    
T  11484919 gactccttgatgtgttggtatcagactgtggtaccagcagatataataatttaggtgttgttgcaattttggttatgggaggcgtcggtaaaacgaccct 11485018  T
Q  205 tgctcaacttgtttacaac 223  Q
    ||| |||||||||||||||    
T  11485019 tgcacaacttgtttacaac 11485037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 222
Target Start/End: Complemental strand, 44957956 - 44957759
Alignment:
Q  22 aagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaagatagactcgtcaatatgttg 121  Q
    ||||| ||||||||||| |||||||||||||||||||| ||| ||||||||| | |||||||| |||||  ||||||||||||||||| |  ||||| ||    
T  44957956 aagtgctagagtttctcatagaacaccttcaagttcaggggttaatgaatctattatggtgggcaggaaacatgataaagatagactcatagatatgctg 44957857  T
Q  122 gtatcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttaca 221  Q
    |||||||| |   | ||  |||||||||||||||||||||||||||| |  || ||||||||||| ||||||||||| || || || |||||||||||||    
T  44957856 gtatcagaca---gcaccagcagaaataataatttaggtgttgttgccaccttaggtatgggaggtgtcggtaaaacgactctcgcacaacttgtttaca 44957760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 17853215 - 17852994
Alignment:
Q  1 ccttggcttacaaagaactgtaagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaa 100  Q
    |||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||| |||||||||    
T  17853215 cctttgcttgcaaagaacggtaagtggtagagtttctcgtagaaccccttcaagttccgtggtaaatgaatctgtcatggtaggaaggaatgatgataaa 17853116  T
Q  101 gatagactcgtcaatatgttggtatcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaa 200  Q
     ||||||| |||| |||| |||||||||| || || ||  ||| |||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| |    
T  17853115 aatagacttgtcagtatgctggtatcagacataggcaccagcataaataacaatttaggtgttgttgcaatattggggatgggaggtgtcggtaaaacga 17853016  T
Q  201 cacttgctcaacttgtttacaa 222  Q
    | ||||| || |||||||||||    
T  17853015 cccttgcacagcttgtttacaa 17852994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 222
Target Start/End: Original strand, 26906719 - 26906916
Alignment:
Q  22 aagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaagatagactcgtcaatatgttg 121  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | |  | |||||||||    
T  26906719 aagtgctagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaatatgttg 26906818  T
Q  122 gtatcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttaca 221  Q
     ||||||| |  |  |||   |   |||||||| |||||||||||||||||||||| ||||||||  | || ||||| || ||||| |||||| ||||||    
T  26906819 ctatcagagagagacaca---acccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttctttaca 26906915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 50045 - 49981
Alignment:
Q  32 gtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatga 96  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50045 gtttcacgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatga 49981  T

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Target: scaffold0002 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 146192 - 146082
Alignment:
Q  16 aactgtaagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaagatagactcgtcaat 115  Q
    |||||| || || ||||||||||  ||||| |||||||||||| |||||||||||||||| ||||| |||||||||||||||||||| |||||| | | |    
T  146192 aactgtgagcgggagagtttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagt 146093  T
Q  116 atgttggtatc 126  Q
    |||||| ||||    
T  146092 atgttgatatc 146082  T

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Target: scaffold0002; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 136141 - 136031
Alignment:
Q  16 aactgtaagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaagatagactcgtcaat 115  Q
    |||||| || || ||||||||||  ||||| |||||||||||| |||||||||||||||| ||||| || ||||||||||||||||| |||||| | | |    
T  136141 aactgtgagcgggagagtttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggaaggaaggatgataaagagagactcattagt 136042  T
Q  116 atgttggtatc 126  Q
    |||||| ||||    
T  136041 atgttgatatc 136031  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 31679986 - 31679783
Alignment:
Q  16 aactgtaagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaagatagactcgtcaat 115  Q
    ||||||||||||||| |||| || ||||||||||||||||||| | ||| || ||||| ||||||| |||||||||  ||||||||| | |||    |||    
T  31679986 aactgtaagtggtagggtttttcttagaacaccttcaagttcactagtagatcaatctttcatggttggtaggaagagtgataaagagaaactaactaat 31679887  T
Q  116 atgttggtatcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttg 215  Q
    |||||| |||||||| || | || | |   ||| ||||| |   ||||||| ||||||| || |||||||| |||||||||||| | || |||||||||     
T  31679886 atgttgctatcagatgttagcactgtc---aatgataatattaatgttgtttcaattttcggcatgggaggtgtcggtaaaacagccctagctcaacttc 31679790  T
Q  216 tttacaa 222  Q
    |||||||    
T  31679789 tttacaa 31679783  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 29836511 - 29836580
Alignment:
Q  62 gtaaatgaatctgtcatggtgggtaggaaggatgataaagatagactcgtcaatatgttggtatcagata 131  Q
    |||||||||| ||||| ||| ||||||||||||||||||||   ||| || ||||||||| |||||||||    
T  29836511 gtaaatgaatatgtcacggttggtaggaaggatgataaagaggaactagttaatatgttgatatcagata 29836580  T

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