View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12829_low_5 (Length: 440)
Name: NF12829_low_5
Description: NF12829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12829_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 41732680 - 41732883
Alignment:
| Q |
19 |
atgactcacatgacacaactggtcaatcaattttaaaggatcttgactatcaatttaaattagacaatcaagatctataattgtgtcatgcaattataac |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41732680 |
atgactcacataacacaactggtcaatcaattttaaaggatcttgactatcaatttaaattagacaatcaagatctataattgtgtcatgcaattataac |
41732779 |
T |
|
| Q |
119 |
agtaaattcattttcgatagtgtgatgaacaatctaataatgcacatgtcatcattgtttatgtgaactactc-----atattatgtggttctaaatgtt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41732780 |
agtaaattcattttcgatagtgtgatgaacaatctaataatgcacatgtcatcattgtttatgtgaactactcatattatattatgtggttctaaatgtt |
41732879 |
T |
|
| Q |
214 |
atgt |
217 |
Q |
| |
|
|||| |
|
|
| T |
41732880 |
atgt |
41732883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 305 - 431
Target Start/End: Original strand, 41732972 - 41733098
Alignment:
| Q |
305 |
gaaaactcagtatccgatccaattttaatccttattatttcactaattttagtcatttctaaaattcttaaaattggactctcattccaccaagcctatg |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41732972 |
gaaaactcagtatccgatccaattttaatccttattatttcactaattttaatcatttctaaaattcttaaaattggattctcattccaccaagcctatg |
41733071 |
T |
|
| Q |
405 |
caccatcaaatcaaccccatccacctt |
431 |
Q |
| |
|
||||||||||||||| ||||||||||| |
|
|
| T |
41733072 |
caccatcaaatcaactccatccacctt |
41733098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University