View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12829_low_6 (Length: 427)
Name: NF12829_low_6
Description: NF12829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12829_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 39379803 - 39380202
Alignment:
| Q |
1 |
gtttctgattcagttgttgttgcattctatctatcaagagtactactgaatattaaataagaagtgttggcatgaatagaaaatatagatgagagaatat |
100 |
Q |
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| T |
39379803 |
gtttctgattcagttgttgttgcattctatctatcaagagtactactgaatattaaataagaagtgttggcatgaatagaaa-tatagatgagagaatat |
39379901 |
T |
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| Q |
101 |
atctannnnnnnnnnnnnnnnnattatgaatgtgtattgtccaagtcgcggaccctgattgccttgtaatgacacataataaacgattttggttgttatt |
200 |
Q |
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| T |
39379902 |
atctatttttt-----------attatgaatgtgtattgtccaagtcgcggaccctgattgccttgtaatgacacataataaacgattttggttgttatt |
39379990 |
T |
|
| Q |
201 |
tt-gatattcaacgattggggtcgatgattgaacaattttcaactgtttatttaagattgaacgattgagatcgattattgtgttacgcaattacagtta |
299 |
Q |
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| T |
39379991 |
tttgatattgaacgattggggtcgatgattgaacaattttcaactgtttatttaagattgaacgattgagatcgattattgtgttacgcaattacagtta |
39380090 |
T |
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| Q |
300 |
ttgtactaaatatacatttccaagttatatgtgtggttgttagtctaatgtggatgtttcttgatggtaggttcctcttgtgcccgaagaaggtatgaga |
399 |
Q |
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| T |
39380091 |
ttgtactaaatatacatttccaagttatatgtgtggttgttagtctaatgtggatgtttcttgatggtaggctcctcttgtgcccgaagaaggtatgaga |
39380190 |
T |
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